Variant report

Variant	rs887779
Chromosome Location	chr6:139743807-139743808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2058471	1.00[CHB][hapmap]
rs2058472	1.00[CHB][hapmap]
rs3010301	0.81[CEU][hapmap];0.80[AMR][1000 genomes]
rs3010302	1.00[CHB][hapmap]
rs3010305	1.00[CHB][hapmap]
rs3010307	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs3010309	0.84[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3010310	1.00[ASN][1000 genomes]
rs3010314	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3010315	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6918767	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519810	chr6:139742788-139743807	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139742400-139744000	Enhancers	Left Ventricle	heart
2	chr6:139742400-139745600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr6:139743000-139744800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr6:139743200-139745600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:139743400-139744000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:139743400-139744200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:139743400-139744400	Enhancers	Pancreas	Pancrea
8	chr6:139743600-139745200	Weak transcription	K562	blood
9	chr6:139743800-139744000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr6:139743800-139745600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:139743800-139754600	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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