Variant report

Variant	rs888412
Chromosome Location	chr14:78606824-78606825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1119485	0.83[EUR][1000 genomes]
rs11851443	0.83[EUR][1000 genomes]
rs12435871	0.81[EUR][1000 genomes]
rs17754261	0.82[EUR][1000 genomes]
rs17827333	0.83[EUR][1000 genomes]
rs34821845	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35515462	0.82[EUR][1000 genomes]
rs35894228	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs369026	0.83[ASN][1000 genomes]
rs452256	0.83[ASN][1000 genomes]
rs61978108	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7142137	0.82[EUR][1000 genomes]
rs8022472	0.83[ASN][1000 genomes]
rs8022610	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902109	chr14:78603877-78634174	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs888412	ACOT6	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78598600-78613000	Weak transcription	Brain Substantia Nigra	brain
2	chr14:78606200-78609200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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