Variant report

Variant	rs889068
Chromosome Location	chr5:167407738-167407739
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10039736	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs11955430	0.83[CEU][hapmap]
rs13158058	0.85[CEU][hapmap]
rs1345735	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs1862419	0.81[CEU][hapmap]
rs2546944	0.83[CEU][hapmap]
rs2546957	0.82[EUR][1000 genomes]
rs2569047	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167391600-167410200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:167397000-167407800	Weak transcription	Left Ventricle	heart
3	chr5:167397200-167420800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:167400800-167409400	Weak transcription	Right Ventricle	heart
5	chr5:167405400-167412600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr5:167406800-167408400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:167407000-167408000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:167407000-167408400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:167407000-167410400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:167407200-167408200	Strong transcription	NHEK	skin
11	chr5:167407400-167408400	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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