Variant report

Variant	rs890870
Chromosome Location	chr19:55699454-55699455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:55689515..55694212-chr19:55695255..55700390,7	K562	blood:

Variant related genes	Relation type
ENSG00000129990	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2301279	1.00[CHB][hapmap]
rs4252548	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816335	chr19:55683977-55901099	Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:55691200-55718200	Weak transcription	Right Atrium	heart
2	chr19:55691600-55718200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:55691800-55717600	Strong transcription	Fetal Intestine Small	intestine
4	chr19:55692000-55707800	Weak transcription	K562	blood
5	chr19:55692200-55710000	Weak transcription	Pancreas	Pancrea
6	chr19:55692600-55701200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr19:55692600-55717000	Strong transcription	Duodenum Mucosa	Duodenum
8	chr19:55693000-55702800	Weak transcription	Fetal Intestine Large	intestine
9	chr19:55693800-55700200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr19:55694600-55702200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr19:55696400-55702600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr19:55697200-55705000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr19:55697400-55702600	Weak transcription	Gastric	stomach
14	chr19:55697600-55705000	Weak transcription	HepG2	liver
15	chr19:55697600-55708200	Weak transcription	Stomach Mucosa	stomach
16	chr19:55697800-55699800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr19:55698000-55705000	Weak transcription	Colonic Mucosa	Colon
18	chr19:55698200-55700000	Weak transcription	Spleen	Spleen
19	chr19:55698200-55700000	Weak transcription	Hela-S3	cervix
20	chr19:55698200-55702600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr19:55699000-55699800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr19:55699000-55700800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr19:55699400-55700000	Enhancers	Primary hematopoietic stem cells	blood
24	chr19:55699400-55700000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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