Variant report

Variant	rs891500
Chromosome Location	chr2:10137215-10137216
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10105907..10108756-chr2:10136707..10139458,2	K562	blood:
2	chr2:10136192..10137782-chr2:10138431..10140040,2	MCF-7	breast:
3	chr2:10135218..10139149-chr2:10182379..10185639,3	K562	blood:
4	chr2:10135064..10137584-chr2:10260509..10262409,2	K562	blood:

Variant related genes	Relation type
ENSG00000272524	Chromatin interaction
ENSG00000172059	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1001215	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11893362	0.93[ASN][1000 genomes]
rs12470881	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs12472800	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12475243	0.94[ASN][1000 genomes]
rs12614084	0.86[ASN][1000 genomes]
rs12616347	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12618788	0.93[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12623004	0.86[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1367383	0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1367384	0.93[ASN][1000 genomes]
rs1367388	0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1367389	0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1430621	0.94[ASN][1000 genomes]
rs1549752	0.89[ASN][1000 genomes]
rs1549753	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1549754	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1820964	0.89[ASN][1000 genomes]
rs1835424	0.91[ASN][1000 genomes]
rs1864539	0.83[MEX][hapmap]
rs1897165	0.89[ASN][1000 genomes]
rs2011516	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2011523	0.89[ASN][1000 genomes]
rs2033324	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2033325	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2033326	0.89[ASN][1000 genomes]
rs2303920	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs28444564	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34629102	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34950562	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35321554	0.88[EUR][1000 genomes]
rs35341467	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35646916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35816086	0.85[EUR][1000 genomes]
rs36033432	0.89[ASN][1000 genomes]
rs3762536	0.85[CEU][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3762537	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3762538	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3791753	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3791758	0.89[ASN][1000 genomes]
rs3791760	0.91[CHD][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs3828260	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4610026	0.87[ASN][1000 genomes]
rs4669508	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4669511	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6432047	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6432048	0.89[ASN][1000 genomes]
rs6714600	0.93[ASN][1000 genomes]
rs6743918	0.93[ASN][1000 genomes]
rs72784422	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72784424	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72784425	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs731453	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7596288	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948591	chr2:9922257-10141191	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv1843231	chr2:9979766-10141191	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1011125	chr2:9996740-10293803	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
4	nsv1011689	chr2:10023891-10293803	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv1002769	chr2:10064511-10157028	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv997334	chr2:10080327-10189279	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv828297	chr2:10109299-10236332	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10101400-10144800	Weak transcription	Brain Germinal Matrix	brain
2	chr2:10113400-10141200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr2:10115000-10148000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:10124400-10139200	Weak transcription	Gastric	stomach
5	chr2:10124800-10143200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:10124800-10149400	Weak transcription	Brain Anterior Caudate	brain
7	chr2:10125000-10140600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:10125000-10147600	Weak transcription	K562	blood
9	chr2:10125000-10149400	Weak transcription	Psoas Muscle	Psoas
10	chr2:10125200-10139200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:10125200-10139200	Weak transcription	Pancreas	Pancrea
12	chr2:10125200-10150000	Weak transcription	Brain Hippocampus Middle	brain
13	chr2:10126000-10144000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr2:10126200-10139200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr2:10126400-10141200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr2:10128000-10142800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:10128000-10146400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr2:10128600-10140800	Weak transcription	Fetal Brain Male	brain
19	chr2:10130000-10142000	Strong transcription	HepG2	liver
20	chr2:10130800-10138600	Enhancers	Fetal Muscle Leg	muscle
21	chr2:10131600-10141200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr2:10131600-10149600	Weak transcription	Brain Substantia Nigra	brain
23	chr2:10132200-10145200	Weak transcription	Fetal Intestine Large	intestine
24	chr2:10132200-10146800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr2:10132400-10146400	Weak transcription	Left Ventricle	heart
26	chr2:10132400-10146800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr2:10133200-10146400	Weak transcription	Colon Smooth Muscle	Colon
28	chr2:10133400-10144200	Strong transcription	Esophagus	oesophagus
29	chr2:10134000-10145600	Weak transcription	Fetal Kidney	kidney
30	chr2:10134000-10145800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:10134200-10142000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr2:10134200-10147000	Weak transcription	HSMMtube	muscle
33	chr2:10134400-10138400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr2:10134400-10144000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr2:10134800-10150600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr2:10135000-10139200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr2:10135200-10140800	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr2:10135400-10139200	Weak transcription	Right Atrium	heart
39	chr2:10135400-10146400	Weak transcription	HUVEC	blood vessel
40	chr2:10135600-10138400	Strong transcription	Liver	Liver
41	chr2:10135800-10139800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr2:10136000-10144600	Weak transcription	Spleen	Spleen
43	chr2:10136200-10137600	Genic enhancers	Adipose Nuclei	Adipose
44	chr2:10136200-10137600	Enhancers	NHDF-Ad	bronchial
45	chr2:10136400-10137600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr2:10136400-10137600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
47	chr2:10136600-10137600	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr2:10136600-10139200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr2:10136800-10137400	Strong transcription	Lung	lung
50	chr2:10136800-10137600	Strong transcription	Cortex derived primary cultured neurospheres	brain

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