Variant report

Variant	rs891512
Chromosome Location	chr7:150708089-150708090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:63)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:63 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr7:150707435-150708200	K562	blood:	n/a	n/a
2	YY1	chr7:150707143-150708184	K562	blood:	n/a	n/a
3	MAX	chr7:150707417-150708427	HepG2	liver:	n/a	n/a
4	E2F6	chr7:150707876-150708099	K562	blood:	n/a	n/a
5	GATA1	chr7:150703848-150708627	K562	blood:	n/a	chr7:150705784-150705791 chr7:150705782-150705792 chr7:150705781-150705793 chr7:150704454-150704464 chr7:150705782-150705791
6	POLR2A	chr7:150706615-150708272	K562	blood:	n/a	n/a
7	RCOR1	chr7:150707231-150708161	K562	blood:	n/a	n/a
8	TBP	chr7:150706598-150708408	K562	blood:	n/a	n/a
9	MAX	chr7:150707595-150708362	K562	blood:	n/a	n/a
10	MYC	chr7:150707891-150708200	HepG2	liver:	n/a	n/a
11	TEAD4	chr7:150707070-150708234	K562	blood:	n/a	n/a
12	POLR2A	chr7:150707507-150708503	HepG2	liver:	n/a	n/a
13	PML	chr7:150707345-150708470	K562	blood:	n/a	n/a
14	E2F6	chr7:150707472-150708255	K562	blood:	n/a	n/a
15	ZBTB7A	chr7:150706932-150708211	K562	blood:	n/a	chr7:150707050-150707058
16	MXI1	chr7:150707532-150708287	K562	blood:	n/a	n/a
17	UBTF	chr7:150707495-150708231	K562	blood:	n/a	n/a
18	USF1	chr7:150707841-150708305	K562	blood:	n/a	n/a
19	EGR1	chr7:150707756-150708125	K562	blood:	n/a	n/a
20	ZBTB7A	chr7:150706956-150708146	K562	blood:	n/a	chr7:150707050-150707058
21	POLR2A	chr7:150707407-150708483	K562	blood:	n/a	n/a
22	POLR2A	chr7:150706649-150708456	K562	blood:	n/a	n/a
23	NR2F2	chr7:150704477-150708592	K562	blood:	n/a	n/a
24	HDAC2	chr7:150707519-150708192	K562	blood:	n/a	n/a
25	TBL1XR1	chr7:150707333-150708151	K562	blood:	n/a	n/a
26	MAX	chr7:150707398-150708465	K562	blood:	n/a	n/a
27	HEY1	chr7:150707420-150708184	HepG2	liver:	n/a	n/a
28	E2F6	chr7:150707863-150708122	K562	blood:	n/a	n/a
29	HMGN3	chr7:150707130-150708126	K562	blood:	n/a	n/a
30	USF1	chr7:150707883-150708094	HepG2	liver:	n/a	n/a
31	TRIM28	chr7:150707310-150708348	K562	blood:	n/a	n/a
32	ELF1	chr7:150707442-150708142	K562	blood:	n/a	n/a
33	POLR2A	chr7:150705122-150708335	K562	blood:	n/a	n/a
34	POLR2A	chr7:150706781-150708510	K562	blood:	n/a	n/a
35	MYC	chr7:150707370-150708403	K562	blood:	n/a	n/a
36	POLR2A	chr7:150707400-150708455	K562	blood:	n/a	n/a
37	CBX3	chr7:150707102-150708607	K562	blood:	n/a	n/a
38	ETS1	chr7:150707538-150708125	K562	blood:	n/a	n/a
39	MXI1	chr7:150707743-150708178	HepG2	liver:	n/a	n/a
40	BHLHE40	chr7:150707405-150708222	K562	blood:	n/a	n/a
41	MYC	chr7:150707429-150708265	K562	blood:	n/a	n/a
42	ETS1	chr7:150707259-150708315	K562	blood:	n/a	chr7:150708275-150708288
43	MYC	chr7:150707437-150708465	K562	blood:	n/a	n/a
44	HEY1	chr7:150707425-150708439	K562	blood:	n/a	n/a
45	POLR2A	chr7:150707621-150708225	HepG2	liver:	n/a	n/a
46	MAZ	chr7:150704780-150708264	K562	blood:	n/a	chr7:150706433-150706443
47	POLR2A	chr7:150705157-150708493	K562	blood:	n/a	n/a
48	MAX	chr7:150704941-150708585	K562	blood:	n/a	chr7:150706433-150706443
49	MYC	chr7:150707940-150708168	K562	blood:	n/a	n/a
50	MAX	chr7:150707688-150708148	HepG2	liver:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150706188..150708123-chr7:150710621..150712135,2	MCF-7	breast:

No data

Variant related genes	Relation type
NOS3	TF binding region
ENSG00000181652	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1808593	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2256314	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4496877	0.84[ASW][hapmap]
rs6951150	0.84[ASW][hapmap]
rs743506	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs743507	0.87[CEU][hapmap];0.81[GIH][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs753482	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv1022246	chr7:150619660-150779924	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv889464	chr7:150640285-150723467	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv889465	chr7:150640285-150800823	Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv1017863	chr7:150643928-150779924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
6	nsv539197	chr7:150643928-150779924	Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
7	nsv1028645	chr7:150643928-150806534	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
8	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
9	nsv889467	chr7:150645534-150723467	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
10	nsv889469	chr7:150657209-150747746	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
11	nsv889471	chr7:150700946-150751590	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
12	esv274999	chr7:150701010-150708089	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
13	nsv609004	chr7:150703915-150708089	Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	nsv609006	chr7:150704400-150708089	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv889473	chr7:150705413-150709571	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv609007	chr7:150705842-150708089	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	nsv889474	chr7:150705842-150717153	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	nsv609009	chr7:150705926-150708089	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
19	nsv609010	chr7:150706383-150708089	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150703600-150708200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
2	chr7:150705000-150711000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr7:150705200-150708400	Enhancers	Fetal Heart	heart
4	chr7:150705800-150708200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:150705800-150708400	Enhancers	Fetal Lung	lung
6	chr7:150705800-150710800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:150705800-150711000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr7:150706000-150708200	Bivalent Enhancer	Fetal Muscle Leg	muscle
9	chr7:150706000-150708200	Bivalent Enhancer	Fetal Thymus	thymus
10	chr7:150706000-150709600	Genic enhancers	Placenta	Placenta
11	chr7:150706000-150709600	Weak transcription	Pancreas	Pancrea
12	chr7:150706000-150710200	Weak transcription	Brain Angular Gyrus	brain
13	chr7:150706000-150710200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr7:150706000-150710800	Weak transcription	Left Ventricle	heart
15	chr7:150706000-150711000	Enhancers	Primary T cells from cord blood	blood
16	chr7:150706000-150711000	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr7:150706000-150711000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr7:150706200-150709000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr7:150706200-150710000	Weak transcription	Brain Substantia Nigra	brain
20	chr7:150706200-150710200	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr7:150706200-150710400	Enhancers	Primary T cells fromperipheralblood	blood
22	chr7:150706200-150710800	Weak transcription	Right Atrium	heart
23	chr7:150706400-150708200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr7:150706400-150710200	Weak transcription	Right Ventricle	heart
25	chr7:150706600-150708200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:150706600-150708400	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr7:150706800-150708200	Flanking Active TSS	K562	blood
28	chr7:150706800-150710600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr7:150707000-150708200	Enhancers	H9 Cell Line	embryonic stem cell
30	chr7:150707000-150708400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr7:150707000-150708400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr7:150707200-150708200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr7:150707200-150708200	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr7:150707200-150708200	Enhancers	Colonic Mucosa	Colon
35	chr7:150707200-150708200	Enhancers	HMEC	breast
36	chr7:150707200-150708400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr7:150707200-150708400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr7:150707400-150708200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr7:150707400-150708400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr7:150707400-150708400	Enhancers	Duodenum Mucosa	Duodenum
41	chr7:150707400-150708400	Flanking Active TSS	Fetal Intestine Large	intestine
42	chr7:150707600-150708200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
43	chr7:150707600-150708200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr7:150707600-150708200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr7:150707600-150708200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr7:150707600-150708200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
47	chr7:150707600-150708200	Enhancers	Brain Anterior Caudate	brain
48	chr7:150707600-150708200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
49	chr7:150707600-150708200	Flanking Active TSS	A549	lung
50	chr7:150707600-150708200	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links