Variant report

Variant	rs891542
Chromosome Location	chr8:125739749-125739750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125734815..125743876-chr8:125864194..125871100,21	MCF-7	breast:
2	chr8:125736316..125742243-chr8:125861977..125870763,24	MCF-7	breast:
3	chr8:125737801..125739852-chr8:125873745..125876555,2	MCF-7	breast:
4	chr8:125739556..125742250-chr8:125984221..125986060,3	MCF-7	breast:
5	chr8:125567904..125569364-chr8:125739461..125740487,6	MCF-7	breast:
6	chr8:125549831..125551409-chr8:125739286..125741874,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170873	Chromatin interaction
ENSG00000147687	Chromatin interaction
ENSG00000255080	Chromatin interaction
ENSG00000147684	Chromatin interaction
ENSG00000180938	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10087913	0.82[ASN][1000 genomes]
rs1430849	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2891101	0.88[ASN][1000 genomes]
rs4870921	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4870925	0.88[ASN][1000 genomes]
rs7824749	0.88[ASN][1000 genomes]
rs891539	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs891543	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs891544	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs967943	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv612147	chr8:125733120-125751065	Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125737200-125741400	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr8:125737200-125741600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:125737800-125740600	Active TSS	Fetal Brain Male	brain
4	chr8:125737800-125741200	Active TSS	Right Atrium	heart
5	chr8:125738000-125740800	Active TSS	HMEC	breast
6	chr8:125738000-125741400	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr8:125738200-125739800	Flanking Active TSS	Fetal Muscle Leg	muscle
8	chr8:125738200-125740000	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
9	chr8:125738200-125740000	Flanking Active TSS	Adipose Nuclei	Adipose
10	chr8:125738200-125740800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr8:125738200-125741000	Active TSS	Right Ventricle	heart
12	chr8:125738200-125741200	Active TSS	Aorta	Aorta
13	chr8:125738200-125741400	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr8:125738200-125741400	Active TSS	NHLF	lung
15	chr8:125738400-125739800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:125738400-125740000	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:125738400-125740000	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
18	chr8:125738400-125740000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
19	chr8:125738400-125740600	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
20	chr8:125738400-125741200	Active TSS	Gastric	stomach
21	chr8:125738400-125741400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr8:125738600-125739800	Active TSS	Cortex derived primary cultured neurospheres	brain
23	chr8:125738600-125739800	Active TSS	Small Intestine	intestine
24	chr8:125738600-125741200	Active TSS	Lung	lung
25	chr8:125738600-125741400	Active TSS	Brain Cingulate Gyrus	brain
26	chr8:125738800-125740000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
27	chr8:125738800-125740200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr8:125738800-125740400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
29	chr8:125738800-125740600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
30	chr8:125738800-125740800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr8:125738800-125741000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr8:125738800-125741000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr8:125738800-125741000	Active TSS	NHDF-Ad	bronchial
34	chr8:125738800-125741200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr8:125738800-125741200	Flanking Active TSS	Primary hematopoietic stem cells	blood
36	chr8:125738800-125741200	Active TSS	Brain Inferior Temporal Lobe	brain
37	chr8:125738800-125741200	Active TSS	Fetal Heart	heart
38	chr8:125738800-125741200	Active TSS	Fetal Intestine Small	intestine
39	chr8:125738800-125741200	Active TSS	Left Ventricle	heart
40	chr8:125738800-125741200	Active TSS	Ovary	ovary
41	chr8:125738800-125741200	Active TSS	Psoas Muscle	Psoas
42	chr8:125738800-125741200	Active TSS	Rectal Mucosa Donor 31	rectum
43	chr8:125738800-125741400	Active TSS	Brain Angular Gyrus	brain
44	chr8:125738800-125741400	Active TSS	Fetal Intestine Large	intestine
45	chr8:125738800-125741400	Active TSS	Rectal Mucosa Donor 29	rectum
46	chr8:125738800-125741400	Active TSS	HSMM	muscle
47	chr8:125739000-125739800	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--
48	chr8:125739000-125739800	Active TSS	Stomach Smooth Muscle	stomach
49	chr8:125739000-125740000	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
50	chr8:125739000-125740000	Flanking Bivalent TSS/Enh	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links