Variant report

Variant	rs891835
Chromosome Location	chr8:130491752-130491753
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:130486576..130489479-chr8:130489655..130491776,3	K562	blood:
2	chr8:130484819..130486542-chr8:130491250..130493226,2	K562	blood:
3	chr8:130476943..130484127-chr8:130486022..130491772,8	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10464870	0.94[MEX][hapmap];0.81[EUR][1000 genomes]
rs1077236	1.00[ASW][hapmap]
rs10956481	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11993877	0.86[EUR][1000 genomes]
rs12543365	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1835844	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7000768	0.92[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.82[TSI][hapmap];0.97[ASN][1000 genomes]
rs7844097	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs891834	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs999877	0.92[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015611	chr8:130449321-130502086	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Glioma	19578367	GWAS catalog

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130475800-130492000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:130487800-130494800	Genic enhancers	K562	blood
3	chr8:130488000-130492600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:130488400-130491800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr8:130489800-130492000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:130489800-130492200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr8:130489800-130492800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:130490000-130492200	Weak transcription	Brain Hippocampus Middle	brain
9	chr8:130490000-130492400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr8:130490200-130491800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr8:130490200-130492000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr8:130490200-130492000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:130490200-130492000	Weak transcription	HSMM	muscle
14	chr8:130490200-130492000	Weak transcription	HSMMtube	muscle
15	chr8:130490200-130492200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr8:130490200-130492200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:130490200-130492200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr8:130490200-130492200	Weak transcription	Brain Angular Gyrus	brain
19	chr8:130490200-130492600	Weak transcription	NHDF-Ad	bronchial
20	chr8:130490200-130503400	Weak transcription	Dnd41	blood
21	chr8:130490400-130492000	Weak transcription	Osteobl	bone
22	chr8:130490400-130492400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr8:130490600-130492000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr8:130490600-130492000	Weak transcription	NH-A	brain
25	chr8:130491000-130492600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:130491200-130492000	Weak transcription	NHLF	lung
27	chr8:130491400-130492200	Enhancers	Colon Smooth Muscle	Colon
28	chr8:130491400-130492800	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr8:130491400-130492800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr8:130491600-130491800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr8:130491600-130492200	Enhancers	Stomach Smooth Muscle	stomach
32	chr8:130491600-130492400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr8:130491600-130493200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr8:130491600-130493200	Enhancers	Brain Germinal Matrix	brain
35	chr8:130491600-130493800	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links