Variant report

Variant	rs893410
Chromosome Location	chr2:133732430-133732431
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4954015	0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583158	chr2:133316092-133862100	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv875138	chr2:133410921-133761794	Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1002955	chr2:133440142-133743211	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1004604	chr2:133658116-133761794	Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv916805	chr2:133664765-133924973	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv834381	chr2:133722671-133897994	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv834382	chr2:133728399-133891418	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:133714600-133735400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:133725800-133732600	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:133726400-133734800	Weak transcription	Brain Anterior Caudate	brain
4	chr2:133729400-133733000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:133730000-133735400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:133732000-133732600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr2:133732000-133732600	Enhancers	Fetal Stomach	stomach
8	chr2:133732000-133733400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr2:133732000-133733400	Enhancers	Fetal Kidney	kidney
10	chr2:133732000-133733600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:133732200-133732600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
12	chr2:133732200-133732600	Enhancers	Fetal Muscle Leg	muscle
13	chr2:133732200-133732600	Enhancers	Rectal Smooth Muscle	rectum
14	chr2:133732200-133732600	Enhancers	NHEK	skin
15	chr2:133732200-133732800	Enhancers	Fetal Lung	lung
16	chr2:133732200-133733000	Enhancers	Fetal Brain Female	brain
17	chr2:133732200-133733200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:133732200-133733800	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr2:133732200-133734000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr2:133732400-133732800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr2:133732400-133732800	Flanking Active TSS	Colon Smooth Muscle	Colon
22	chr2:133732400-133733600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr2:133732400-133733800	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr2:133732400-133733800	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr2:133732400-133735600	Weak transcription	NH-A	brain

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