Variant report

Variant	rs89356
Chromosome Location	chr5:14656382-14656383
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:14654818..14657661-chr5:14662686..14665477,2	MCF-7	breast:
2	chr5:14652517..14654606-chr5:14656081..14657786,2	K562	blood:

Variant related genes	Relation type
ENSG00000261360	Chromatin interaction
ENSG00000154124	Chromatin interaction
ENSG00000250182	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10038397	0.95[EUR][1000 genomes]
rs10052744	1.00[CHD][hapmap]
rs10065032	0.93[EUR][1000 genomes]
rs10078863	0.98[EUR][1000 genomes]
rs10080009	1.00[CHD][hapmap]
rs153921	1.00[CHD][hapmap]
rs153926	1.00[CHD][hapmap]
rs17250963	1.00[CHD][hapmap]
rs17296541	1.00[CHD][hapmap];0.84[TSI][hapmap]
rs17363158	0.90[CEU][hapmap];0.93[EUR][1000 genomes]
rs17364066	0.90[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[EUR][1000 genomes]
rs187483	1.00[CHD][hapmap]
rs250438	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs3045	0.90[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes]
rs3845281	1.00[CHD][hapmap]
rs58936946	0.90[EUR][1000 genomes]
rs59980057	1.00[EUR][1000 genomes]
rs60501770	0.93[EUR][1000 genomes]
rs6884420	0.93[EUR][1000 genomes]
rs6886163	0.93[EUR][1000 genomes]
rs6892588	0.90[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes]
rs697565	1.00[CHD][hapmap]
rs9885040	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv830211	chr5:14474675-14675776	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1032951	chr5:14529579-14667342	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv528770	chr5:14655699-14657062	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs89356	FAM105B	Cis_1M	lymphoblastoid	RTeQTL
rs89356	DEDD	trans	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14655200-14657000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr5:14655200-14663800	Weak transcription	Pancreas	Pancrea
3	chr5:14655600-14656600	Weak transcription	GM12878-XiMat	blood
4	chr5:14655600-14659800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:14655600-14659800	Weak transcription	NHEK	skin
6	chr5:14655600-14661200	Weak transcription	Primary T cells from cord blood	blood
7	chr5:14655600-14663400	Weak transcription	Fetal Thymus	thymus
8	chr5:14655800-14663000	Weak transcription	Dnd41	blood

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