Variant report

Variant	rs894068
Chromosome Location	chr11:76454377-76454378
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76445009..76450493-chr11:76452594..76458852,7	K562	blood:
2	chr11:76454033..76456801-chr11:76571027..76573144,2	K562	blood:
3	chr11:76451295..76455303-chr11:76456358..76459104,3	K562	blood:
4	chr11:76446403..76452318-chr11:76452779..76457589,9	K562	blood:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11236907	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236911	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236920	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12223582	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs12575347	0.81[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs1941600	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs4944121	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4945112	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1810781	chr11:76311021-76464814	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv1850014	chr11:76384895-76464814	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv976471	chr11:76435262-76459660	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv430404	chr11:76436952-76462852	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76433400-76456400	Weak transcription	Right Atrium	heart
2	chr11:76446400-76463200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:76447400-76458600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:76448800-76454600	Weak transcription	Fetal Intestine Small	intestine
5	chr11:76448800-76456400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:76449200-76458000	Weak transcription	Fetal Brain Male	brain
7	chr11:76449400-76455600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:76449400-76455600	Weak transcription	A549	lung
9	chr11:76449400-76458600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:76450000-76456600	Weak transcription	Gastric	stomach
11	chr11:76450400-76454400	Weak transcription	Stomach Mucosa	stomach
12	chr11:76450400-76455600	Weak transcription	Placenta	Placenta
13	chr11:76450400-76463400	Weak transcription	Right Ventricle	heart
14	chr11:76450600-76455400	Weak transcription	Fetal Heart	heart
15	chr11:76451200-76454400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr11:76452600-76456400	Weak transcription	Colonic Mucosa	Colon
17	chr11:76452800-76454400	Weak transcription	Spleen	Spleen
18	chr11:76452800-76455400	Weak transcription	Adipose Nuclei	Adipose
19	chr11:76453600-76455000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:76454000-76454400	Enhancers	HSMMtube	muscle
21	chr11:76454000-76454600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:76454000-76454800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr11:76454000-76455000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:76454000-76456200	Enhancers	NHDF-Ad	bronchial
25	chr11:76454000-76456400	Enhancers	K562	blood
26	chr11:76454000-76457000	Enhancers	Fetal Muscle Leg	muscle
27	chr11:76454200-76454600	Enhancers	Skeletal Muscle Male	skeletal muscle

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