Variant report

Variant	rs894175
Chromosome Location	chr3:142936593-142936594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142935120..142937637-chr3:142937877..142939570,2	MCF-7	breast:
2	chr3:142933374..142937118-chr3:142939813..142945037,5	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9985367	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757893	chr3:142720230-142962932	Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2759183	chr3:142720230-142964373	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv508250	chr3:142842454-142943722	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv34280	chr3:142887460-142962075	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv818171	chr3:142894411-142960273	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1009573	chr3:142896048-142959777	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2757014	chr3:142905661-142964373	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142926600-142937200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:142935000-142936600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr3:142935000-142936600	Flanking Active TSS	Dnd41	blood
4	chr3:142935000-142937600	Enhancers	Primary hematopoietic stem cells	blood
5	chr3:142935000-142937600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:142935000-142938000	Enhancers	Thymus	Thymus
7	chr3:142935000-142940600	Enhancers	Fetal Thymus	thymus
8	chr3:142935200-142936600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:142935200-142937400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:142935200-142937800	Enhancers	Primary B cells from cord blood	blood
11	chr3:142935200-142938000	Enhancers	Primary B cells from peripheral blood	blood
12	chr3:142935400-142936600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr3:142935400-142936600	Enhancers	Brain Anterior Caudate	brain
14	chr3:142935400-142937800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:142935400-142938000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:142935400-142938000	Enhancers	GM12878-XiMat	blood
17	chr3:142935800-142936600	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr3:142935800-142936600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr3:142936000-142936600	Enhancers	Liver	Liver
20	chr3:142936000-142936600	Enhancers	Brain Hippocampus Middle	brain
21	chr3:142936000-142936600	Enhancers	K562	blood
22	chr3:142936000-142937400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:142936000-142937800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:142936000-142937800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:142936200-142936600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr3:142936200-142937600	Enhancers	Primary T cells from cord blood	blood
27	chr3:142936200-142937600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr3:142936400-142940600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:142936400-142941400	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr3:142936400-142942600	Weak transcription	Fetal Lung	lung
31	chr3:142936400-142945600	Weak transcription	Brain Substantia Nigra	brain

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