Variant report

Variant	rs894255
Chromosome Location	chr11:101755364-101755365
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101755070..101757316-chr11:101760097..101762791,3	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10501990	0.87[EUR][1000 genomes]
rs10736621	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10750622	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10791523	0.88[EUR][1000 genomes]
rs10791524	0.88[EUR][1000 genomes]
rs10791534	0.88[EUR][1000 genomes]
rs10791539	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10791540	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10895192	0.84[EUR][1000 genomes]
rs10895202	0.89[EUR][1000 genomes]
rs1372415	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1441932	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17745489	0.83[EUR][1000 genomes]
rs1815903	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1815904	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1815905	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1939031	0.87[EUR][1000 genomes]
rs1939033	0.82[EUR][1000 genomes]
rs1939036	0.89[EUR][1000 genomes]
rs1939041	0.87[EUR][1000 genomes]
rs1939044	0.84[EUR][1000 genomes]
rs1939045	0.84[EUR][1000 genomes]
rs1939056	0.86[EUR][1000 genomes]
rs1939063	0.84[EUR][1000 genomes]
rs1939069	0.85[EUR][1000 genomes]
rs1939070	0.83[EUR][1000 genomes]
rs1939432	0.83[EUR][1000 genomes]
rs1939461	0.84[EUR][1000 genomes]
rs2000535	0.89[EUR][1000 genomes]
rs2155064	0.84[EUR][1000 genomes]
rs2155066	0.88[EUR][1000 genomes]
rs4084123	0.83[EUR][1000 genomes]
rs4237604	0.89[EUR][1000 genomes]
rs4445600	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4576789	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4754020	0.82[EUR][1000 genomes]
rs4754021	0.87[EUR][1000 genomes]
rs4754027	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4754031	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4754799	0.84[EUR][1000 genomes]
rs4754802	0.87[EUR][1000 genomes]
rs4754805	0.89[EUR][1000 genomes]
rs4754810	0.89[EUR][1000 genomes]
rs4754812	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4754814	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6590920	0.84[EUR][1000 genomes]
rs6590923	0.87[EUR][1000 genomes]
rs7101850	0.87[EUR][1000 genomes]
rs7117680	0.87[EUR][1000 genomes]
rs7128050	0.81[EUR][1000 genomes]
rs7950837	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs894256	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs894257	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs947993	0.84[EUR][1000 genomes]
rs947994	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv832250	chr11:101617934-101804020	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101750200-101778200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:101753000-101756400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:101754600-101755600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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