Variant report

Variant	rs894297
Chromosome Location	chr15:78414211-78414212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78411897..78414828-chr15:78414892..78418172,3	MCF-7	breast:
2	chr15:78413599..78415275-chr15:78425764..78428754,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11856417	0.87[AFR][1000 genomes]
rs1561807	0.87[EUR][1000 genomes]
rs4886558	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8040421	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78396200-78421800	Weak transcription	Right Ventricle	heart
2	chr15:78396600-78423800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:78397600-78421400	Weak transcription	Fetal Muscle Leg	muscle
4	chr15:78398400-78423200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:78400000-78422400	Weak transcription	Brain Germinal Matrix	brain
6	chr15:78400200-78414600	Weak transcription	Fetal Brain Female	brain
7	chr15:78401400-78414400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:78405600-78421400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:78406000-78421600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr15:78406000-78423000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr15:78406400-78420000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr15:78406400-78423000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr15:78409000-78423000	Weak transcription	Brain Anterior Caudate	brain
14	chr15:78412200-78417200	Strong transcription	Thymus	Thymus
15	chr15:78412200-78419200	Strong transcription	Fetal Intestine Small	intestine
16	chr15:78412800-78416000	Strong transcription	Fetal Thymus	thymus
17	chr15:78413000-78417800	Strong transcription	Fetal Stomach	stomach
18	chr15:78413400-78415000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:78413600-78415000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:78413600-78421400	Weak transcription	Right Atrium	heart
21	chr15:78413800-78421200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:78413800-78421200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr15:78413800-78421200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:78413800-78422600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr15:78413800-78422600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr15:78414200-78417800	Strong transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links