Variant report

Variant	rs895086
Chromosome Location	chr4:82381313-82381314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr4:82381202-82381348	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:82337897..82339898-chr4:82380969..82382702,2	K562	blood:

Variant related genes	Relation type
RASGEF1B	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11726251	0.85[ASN][1000 genomes]
rs1348600	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs17005141	0.82[CEU][hapmap];0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs2120817	0.81[CHB][hapmap];0.81[CHD][hapmap]
rs55731068	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60314010	0.84[ASN][1000 genomes]
rs6829780	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72663869	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs748436	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv4404	chr4:82340986-82386148	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv829986	chr4:82345163-82509860	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82345800-82385800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:82346200-82381600	Strong transcription	Fetal Thymus	thymus
3	chr4:82346600-82386600	Weak transcription	Psoas Muscle	Psoas
4	chr4:82346600-82388400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr4:82346800-82382400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr4:82349000-82385200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:82351800-82382800	Weak transcription	Spleen	Spleen
8	chr4:82352400-82390000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:82354200-82390800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:82361200-82382800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:82361400-82386600	Weak transcription	Fetal Kidney	kidney
12	chr4:82362200-82389800	Weak transcription	Fetal Brain Male	brain
13	chr4:82363600-82390400	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:82363600-82391000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr4:82368200-82391400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr4:82368800-82383000	Weak transcription	Colon Smooth Muscle	Colon
17	chr4:82369400-82381600	Weak transcription	Gastric	stomach
18	chr4:82369400-82390000	Weak transcription	Brain Germinal Matrix	brain
19	chr4:82369600-82381400	Weak transcription	Esophagus	oesophagus
20	chr4:82369600-82381600	Weak transcription	Fetal Brain Female	brain
21	chr4:82369600-82382000	Weak transcription	Fetal Heart	heart
22	chr4:82369600-82388600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr4:82369600-82391000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr4:82373200-82381600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr4:82373600-82390000	Weak transcription	Thymus	Thymus
26	chr4:82374800-82385200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr4:82375000-82385400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr4:82375000-82386600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr4:82375200-82388400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr4:82375400-82386000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr4:82375800-82386800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr4:82376000-82383200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr4:82376800-82382800	Weak transcription	Ovary	ovary
34	chr4:82377000-82384800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr4:82377000-82386600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr4:82377000-82388000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr4:82377200-82385000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr4:82377200-82389000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr4:82377400-82386400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr4:82377600-82383600	Strong transcription	Primary B cells from cord blood	blood
41	chr4:82377800-82381400	Strong transcription	Primary B cells from peripheral blood	blood
42	chr4:82377800-82390800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr4:82377800-82391000	Weak transcription	Dnd41	blood
44	chr4:82378200-82390000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr4:82378400-82382600	Enhancers	Brain Cingulate Gyrus	brain
46	chr4:82378600-82390800	Weak transcription	Fetal Stomach	stomach
47	chr4:82378800-82381800	Weak transcription	Aorta	Aorta
48	chr4:82378800-82382800	Weak transcription	Left Ventricle	heart
49	chr4:82378800-82388400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr4:82379000-82382200	Weak transcription	Stomach Mucosa	stomach

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