Variant report

Variant	rs895256
Chromosome Location	chr11:85535209-85535210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85371590..85374337-chr11:85533761..85535613,2	MCF-7	breast:
2	chr11:85535201..85544742-chr11:85551836..85558472,22	MCF-7	breast:
3	chr11:85446235..85448098-chr11:85532932..85535818,2	MCF-7	breast:
4	chr11:85371076..85377725-chr11:85533880..85541610,16	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137504	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11826218	1.00[ASN][1000 genomes]
rs11828105	1.00[ASN][1000 genomes]
rs1445498	0.85[AMR][1000 genomes]
rs1445500	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445501	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445503	0.86[ASN][1000 genomes]
rs1445504	0.80[ASN][1000 genomes]
rs1445505	0.86[ASN][1000 genomes]
rs1445511	1.00[ASN][1000 genomes]
rs17744606	1.00[ASN][1000 genomes]
rs17744675	0.86[ASN][1000 genomes]
rs17744699	0.86[ASN][1000 genomes]
rs17744711	0.80[ASN][1000 genomes]
rs17817230	1.00[ASN][1000 genomes]
rs17817254	1.00[ASN][1000 genomes]
rs17817308	0.86[ASN][1000 genomes]
rs17817314	0.86[ASN][1000 genomes]
rs17817326	0.86[ASN][1000 genomes]
rs17817331	0.86[ASN][1000 genomes]
rs17817343	0.86[ASN][1000 genomes]
rs17817355	0.86[ASN][1000 genomes]
rs2044390	1.00[ASN][1000 genomes]
rs4015260	1.00[ASN][1000 genomes]
rs4296062	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55951560	1.00[ASN][1000 genomes]
rs55978615	1.00[ASN][1000 genomes]
rs56036199	1.00[ASN][1000 genomes]
rs56202113	1.00[ASN][1000 genomes]
rs56261432	1.00[ASN][1000 genomes]
rs56396016	0.86[ASN][1000 genomes]
rs59179556	1.00[ASN][1000 genomes]
rs60135492	1.00[ASN][1000 genomes]
rs7102361	0.93[ASN][1000 genomes]
rs7121363	1.00[ASN][1000 genomes]
rs7127478	1.00[ASN][1000 genomes]
rs7127501	0.87[ASN][1000 genomes]
rs7127873	1.00[ASN][1000 genomes]
rs7931698	1.00[ASN][1000 genomes]
rs7931771	1.00[ASN][1000 genomes]
rs7943104	1.00[ASN][1000 genomes]
rs7950738	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv832222	chr11:85405712-85603981	Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1047147	chr11:85459235-85594800	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv541114	chr11:85459235-85594800	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	esv2762927	chr11:85468051-85559618	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv1052737	chr11:85477084-85554914	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv541115	chr11:85477084-85554914	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
12	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
13	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85524800-85537200	Weak transcription	Small Intestine	intestine
2	chr11:85532000-85535400	Enhancers	Stomach Mucosa	stomach
3	chr11:85532400-85538800	Enhancers	Primary T cells fromperipheralblood	blood
4	chr11:85532400-85540000	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr11:85532600-85535400	Enhancers	NHDF-Ad	bronchial
6	chr11:85532600-85539200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr11:85532600-85539600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:85532800-85535400	Enhancers	NHLF	lung
9	chr11:85532800-85536200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:85532800-85539200	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr11:85532800-85540000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:85533000-85537200	Weak transcription	Hela-S3	cervix
13	chr11:85533200-85535400	Enhancers	A549	lung
14	chr11:85533200-85536800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:85533200-85538400	Weak transcription	NH-A	brain
16	chr11:85533200-85539800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr11:85533400-85538400	Weak transcription	Pancreas	Pancrea
18	chr11:85533600-85535400	Enhancers	HSMMtube	muscle
19	chr11:85534000-85537000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:85534000-85537200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:85534000-85537200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr11:85534000-85537400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:85534200-85535400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
24	chr11:85534200-85535400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:85534200-85535400	Enhancers	Dnd41	blood
26	chr11:85534200-85535600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:85534200-85536800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr11:85534200-85537400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:85534200-85537400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:85534200-85537400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr11:85534200-85537600	Weak transcription	Osteobl	bone
32	chr11:85534200-85538200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:85534400-85535400	Flanking Active TSS	Primary T cells from cord blood	blood
34	chr11:85534400-85535600	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr11:85534400-85536600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:85534400-85536800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr11:85534400-85537000	Weak transcription	HSMM	muscle
38	chr11:85534400-85537400	Weak transcription	HMEC	breast
39	chr11:85534600-85540000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:85534800-85535400	Enhancers	Primary hematopoietic stem cells	blood
41	chr11:85534800-85535400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:85534800-85536000	Enhancers	Fetal Thymus	thymus
43	chr11:85534800-85539200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr11:85535000-85535400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
45	chr11:85535000-85535400	Enhancers	Fetal Lung	lung
46	chr11:85535000-85535400	Enhancers	Thymus	Thymus
47	chr11:85535000-85536000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:85535000-85536200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
49	chr11:85535200-85535400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr11:85535200-85535600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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