Variant report

Variant	rs896437
Chromosome Location	chr11:66650839-66650840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66623800..66625594-chr11:66650788..66652372,2	K562	blood:
2	chr11:66620817..66623976-chr11:66646170..66651314,5	MCF-7	breast:
3	chr11:66650346..66651266-chr11:66669155..66669690,2	MCF-7	breast:
4	chr11:66640579..66644175-chr11:66648917..66652443,5	MCF-7	breast:
5	chr11:66453511..66455153-chr11:66650234..66652449,2	MCF-7	breast:
6	chr11:66649204..66651598-chr11:66653844..66656638,2	MCF-7	breast:
7	chr11:66632881..66640228-chr11:66642679..66650860,16	MCF-7	breast:
8	chr11:66600847..66602669-chr11:66650829..66652399,2	MCF-7	breast:
9	chr11:66373116..66374027-chr11:66650670..66651327,5	MCF-7	breast:
10	chr11:66650776..66653492-chr11:66654668..66657243,4	K562	blood:
11	chr11:66650729..66651559-chr11:66724173..66724729,2	MCF-7	breast:
12	chr11:66648193..66651672-chr17:57913851..57917010,3	MCF-7	breast:
13	chr11:66622039..66625017-chr11:66649719..66652504,2	K562	blood:
14	chr11:66607636..66611821-chr11:66647654..66651016,8	MCF-7	breast:
15	chr11:66622201..66627158-chr11:66645726..66651981,9	MCF-7	breast:
16	chr11:66650405..66651268-chr11:66788800..66789658,2	MCF-7	breast:
17	chr11:66462020..66462866-chr11:66650520..66651300,4	MCF-7	breast:
18	chr11:66373172..66373871-chr11:66650649..66651352,3	MCF-7	breast:
19	chr11:66647060..66650897-chr11:66788816..66791425,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000173898	Chromatin interaction
ENSG00000062716	Chromatin interaction
ENSG00000173621	Chromatin interaction
ENSG00000173227	Chromatin interaction
ENSG00000173653	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11227596	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3782079	0.82[ASN][1000 genomes]
rs55662252	0.82[ASN][1000 genomes]
rs55920871	0.89[EUR][1000 genomes]
rs57206977	0.82[ASN][1000 genomes]
rs58800112	0.91[AFR][1000 genomes]
rs60395535	0.82[ASN][1000 genomes]
rs61088349	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs744465	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897794	chr11:66579572-66744119	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv555226	chr11:66579572-66845362	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv428574	chr11:66619002-66804133	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv832194	chr11:66634462-66805980	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66639000-66657200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:66639200-66657400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:66639400-66659800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:66643200-66651400	Enhancers	Fetal Muscle Leg	muscle
5	chr11:66643200-66653000	Enhancers	Liver	Liver
6	chr11:66645200-66652000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:66645400-66651200	Enhancers	Gastric	stomach
8	chr11:66645400-66651200	Enhancers	HMEC	breast
9	chr11:66645600-66652400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:66645800-66651400	Enhancers	HSMMtube	muscle
11	chr11:66646000-66660800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:66646200-66651400	Enhancers	Fetal Brain Male	brain
13	chr11:66646600-66651400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:66646800-66651400	Enhancers	Adipose Nuclei	Adipose
15	chr11:66647000-66651200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr11:66647600-66651000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:66647600-66653400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr11:66647800-66651000	Enhancers	Fetal Lung	lung
19	chr11:66647800-66651200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr11:66648200-66651200	Enhancers	Fetal Heart	heart
21	chr11:66648400-66651000	Weak transcription	HUVEC	blood vessel
22	chr11:66648600-66651400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:66648600-66652400	Weak transcription	Placenta	Placenta
24	chr11:66648600-66653400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:66648600-66653800	Weak transcription	Left Ventricle	heart
26	chr11:66648600-66657600	Weak transcription	GM12878-XiMat	blood
27	chr11:66648800-66653200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:66649000-66654200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr11:66649200-66651000	Enhancers	Right Ventricle	heart
30	chr11:66649200-66655200	Weak transcription	Right Atrium	heart
31	chr11:66649400-66651400	Enhancers	NH-A	brain
32	chr11:66649400-66652600	Enhancers	Fetal Muscle Trunk	muscle
33	chr11:66649600-66651000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
34	chr11:66649600-66651000	Enhancers	Fetal Stomach	stomach
35	chr11:66649600-66651400	Weak transcription	Fetal Kidney	kidney
36	chr11:66649800-66651000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:66649800-66651000	Flanking Active TSS	Stomach Smooth Muscle	stomach
38	chr11:66649800-66651200	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr11:66649800-66651200	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr11:66649800-66651200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:66650000-66651000	Flanking Active TSS	Brain Germinal Matrix	brain
42	chr11:66650000-66651000	Enhancers	Lung	lung
43	chr11:66650000-66651200	Enhancers	Placenta Amnion	Placenta Amnion
44	chr11:66650000-66651400	Flanking Active TSS	Hela-S3	cervix
45	chr11:66650200-66651000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:66650200-66651000	Flanking Active TSS	Fetal Brain Female	brain
47	chr11:66650200-66651000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr11:66650200-66651000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
49	chr11:66650200-66651200	Flanking Active TSS	Brain Cingulate Gyrus	brain
50	chr11:66650200-66651200	Enhancers	Fetal Intestine Large	intestine

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