Variant report

Variant	rs896890
Chromosome Location	chr2:125633976-125633977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1823819	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2685173	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs314701	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs314702	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs314704	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs314705	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs314707	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs314709	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs314712	0.85[CHB][hapmap]
rs314716	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs314721	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834360	chr2:125492685-125683200	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv834361	chr2:125601081-125810992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125629200-125637000	Weak transcription	Gastric	stomach
2	chr2:125632000-125635000	Weak transcription	Fetal Lung	lung
3	chr2:125633200-125638800	Weak transcription	Stomach Mucosa	stomach
4	chr2:125633800-125634600	Enhancers	GM12878-XiMat	blood
5	chr2:125633800-125635800	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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