Variant report

Variant	rs897149
Chromosome Location	chr8:126580618-126580619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126565664..126567400-chr8:126579554..126582844,3	MCF-7	breast:
2	chr8:126579931..126585815-chr8:126586527..126590543,9	MCF-7	breast:
3	chr8:126559583..126561095-chr8:126580080..126582258,2	MCF-7	breast:
4	chr8:126570042..126574536-chr8:126578331..126584724,7	MCF-7	breast:
5	chr8:126442845..126445477-chr8:126580285..126582930,2	MCF-7	breast:
6	chr8:126578692..126581017-chr8:126581136..126583682,2	K562	blood:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1020649	0.98[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1031496	0.95[CHB][hapmap]
rs1551396	0.94[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2219142	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4006555	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs897148	0.94[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs897150	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv6377	chr8:126579620-126639253	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126569800-126588200	Weak transcription	Spleen	Spleen
2	chr8:126572600-126581200	Weak transcription	HMEC	breast
3	chr8:126576200-126581200	Weak transcription	NHDF-Ad	bronchial
4	chr8:126576400-126581600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:126576400-126581800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:126578800-126582400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr8:126578800-126583800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr8:126578800-126586600	Weak transcription	Liver	Liver
9	chr8:126579800-126583000	Enhancers	Fetal Lung	lung
10	chr8:126580000-126583000	Enhancers	Stomach Smooth Muscle	stomach
11	chr8:126580200-126580800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr8:126580200-126581000	Enhancers	Fetal Brain Male	brain
13	chr8:126580200-126581200	Enhancers	Left Ventricle	heart
14	chr8:126580200-126582400	Enhancers	Colon Smooth Muscle	Colon
15	chr8:126580200-126582800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr8:126580200-126583000	Enhancers	Fetal Muscle Leg	muscle
17	chr8:126580200-126583000	Enhancers	Fetal Stomach	stomach
18	chr8:126580400-126581400	Enhancers	GM12878-XiMat	blood
19	chr8:126580400-126581600	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr8:126580400-126581600	Enhancers	Lung	lung
21	chr8:126580400-126581800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr8:126580400-126581800	Enhancers	Primary B cells from peripheral blood	blood
23	chr8:126580400-126582200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:126580400-126582200	Enhancers	Adipose Nuclei	Adipose
25	chr8:126580400-126582600	Enhancers	Right Atrium	heart
26	chr8:126580400-126582800	Enhancers	Ovary	ovary
27	chr8:126580400-126583000	Enhancers	Colonic Mucosa	Colon
28	chr8:126580600-126581600	Enhancers	Primary B cells from cord blood	blood
29	chr8:126580600-126581600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr8:126580600-126581600	Weak transcription	Psoas Muscle	Psoas
31	chr8:126580600-126581800	Weak transcription	Fetal Thymus	thymus

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