Variant report

Variant	rs8973
Chromosome Location	chr6:30260284-30260285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:30253881..30256754-chr6:30260097..30262848,2	K562	blood:
2	chr6:30252759..30255238-chr6:30259502..30262468,2	MCF-7	breast:
3	chr6:30259621..30261332-chr6:30272823..30275390,2	K562	blood:
4	chr6:30258650..30265091-chr6:30270138..30274799,6	MCF-7	breast:
5	chr6:30260174..30261708-chr6:30294230..30295907,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM26-2	chr6:30260022-30260376	ENSG00000231074.4
2	lnc-TRIM26-2	chr6:30260111-30260376	ENSG00000231074.4

No data

Variant related genes	Relation type
ENSG00000204599	Chromatin interaction
ENSG00000231074	Chromatin interaction

rs_ID	r²[population]
rs7759710	0.84[AFR][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs8973	AHSP	trans	lymphoblastoid	seeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30247600-30262400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:30252200-30262600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr6:30255200-30261000	Weak transcription	Fetal Brain Male	brain
4	chr6:30255600-30261200	Weak transcription	Stomach Mucosa	stomach
5	chr6:30255600-30264000	Strong transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:30255800-30261400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:30255800-30264400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:30256000-30263200	Strong transcription	HSMMtube	muscle
9	chr6:30256000-30270200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:30256200-30261200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
11	chr6:30256200-30262800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
12	chr6:30256200-30263800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:30256200-30264000	Strong transcription	Brain Anterior Caudate	brain
14	chr6:30256200-30264800	Strong transcription	Primary B cells from peripheral blood	blood
15	chr6:30256200-30292000	Weak transcription	Fetal Heart	heart
16	chr6:30256400-30263200	Strong transcription	Brain Inferior Temporal Lobe	brain
17	chr6:30256400-30263200	Strong transcription	Thymus	Thymus
18	chr6:30256400-30263400	Strong transcription	Left Ventricle	heart
19	chr6:30256400-30263800	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr6:30256400-30263800	Strong transcription	Fetal Intestine Large	intestine
21	chr6:30256400-30264000	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr6:30256400-30264200	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr6:30256400-30264200	Strong transcription	Stomach Smooth Muscle	stomach
24	chr6:30256400-30264400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:30256600-30263600	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr6:30256600-30263800	Strong transcription	A549	lung
27	chr6:30256600-30264200	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr6:30256800-30263200	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr6:30256800-30263800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:30256800-30264400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:30257000-30261600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr6:30257000-30262200	Weak transcription	Hela-S3	cervix
33	chr6:30257000-30263800	Strong transcription	Primary B cells from cord blood	blood
34	chr6:30257000-30264000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:30257000-30264000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:30257000-30264000	Strong transcription	Placenta	Placenta
37	chr6:30257000-30264200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:30257000-30264200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr6:30257000-30264200	Strong transcription	Fetal Stomach	stomach
40	chr6:30257000-30264200	Strong transcription	NH-A	brain
41	chr6:30257000-30264400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:30257000-30264400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:30257000-30264400	Strong transcription	Fetal Thymus	thymus
44	chr6:30257200-30262600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:30257200-30263000	Strong transcription	HSMM	muscle
46	chr6:30257200-30263000	Strong transcription	Osteobl	bone
47	chr6:30257200-30263200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr6:30257200-30263400	Strong transcription	Fetal Muscle Trunk	muscle
49	chr6:30257200-30264200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr6:30257200-30264400	Strong transcription	Primary T cells from cord blood	blood

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