Variant report

Variant	rs897329
Chromosome Location	chr14:69822613-69822614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69821172..69826934-chr14:69835934..69842143,9	MCF-7	breast:
2	chr14:69810681..69813205-chr14:69822055..69824419,2	K562	blood:
3	chr14:69822349..69827857-chr14:69829114..69832930,7	MCF-7	breast:
4	chr14:69618455..69620714-chr14:69822372..69824189,2	MCF-7	breast:
5	chr14:69822116..69824651-chr14:69862569..69864900,2	MCF-7	breast:
6	chr14:69713333..69716497-chr14:69822464..69825610,4	MCF-7	breast:
7	chr14:69821722..69824231-chr14:69923203..69925103,2	MCF-7	breast:
8	chr14:69800242..69802795-chr14:69820027..69823716,5	MCF-7	breast:
9	chr14:69821220..69824181-chr14:69864124..69866738,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000100632	Chromatin interaction
ENSG00000139990	Chromatin interaction
ENSG00000029364	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1045301	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12050199	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12050204	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1455054	0.92[ASN][1000 genomes]
rs61982390	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61982402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61982406	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61982426	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456334	chr14:69793624-69831037	Strong transcription Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv564966	chr14:69793624-69831037	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69809800-69822800	Weak transcription	Right Atrium	heart
2	chr14:69815600-69838800	Weak transcription	Brain Germinal Matrix	brain
3	chr14:69817600-69823000	Enhancers	Primary B cells from peripheral blood	blood
4	chr14:69818400-69827400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:69818600-69842800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:69820400-69823000	Enhancers	Primary B cells from cord blood	blood
7	chr14:69820600-69822800	Enhancers	Fetal Thymus	thymus
8	chr14:69820600-69823000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:69820800-69823200	Enhancers	Fetal Muscle Leg	muscle
10	chr14:69820800-69823200	Weak transcription	Gastric	stomach
11	chr14:69821000-69823200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr14:69821000-69838800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:69821000-69839600	Weak transcription	Fetal Brain Female	brain
14	chr14:69821200-69822800	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr14:69821200-69823000	Enhancers	Fetal Muscle Trunk	muscle
16	chr14:69821200-69823000	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr14:69821200-69823200	Enhancers	NHDF-Ad	bronchial
18	chr14:69821200-69825400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:69821400-69823000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr14:69821400-69823200	Enhancers	Rectal Smooth Muscle	rectum
21	chr14:69821400-69824200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr14:69821600-69822800	Enhancers	Aorta	Aorta
23	chr14:69821600-69823000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr14:69821600-69823200	Enhancers	Colon Smooth Muscle	Colon
25	chr14:69821600-69823600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr14:69821800-69823000	Enhancers	Brain Hippocampus Middle	brain
27	chr14:69821800-69823200	Enhancers	Stomach Smooth Muscle	stomach
28	chr14:69821800-69824200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:69821800-69827200	Weak transcription	Fetal Intestine Small	intestine
30	chr14:69821800-69852400	Weak transcription	Spleen	Spleen
31	chr14:69822000-69822800	Enhancers	HepG2	liver
32	chr14:69822000-69823200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr14:69822000-69829600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr14:69822200-69823000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr14:69822200-69823000	Enhancers	Right Ventricle	heart
36	chr14:69822200-69823200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr14:69822200-69823200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr14:69822200-69823200	Enhancers	Muscle Satellite Cultured Cells	--
39	chr14:69822200-69823200	Enhancers	HSMMtube	muscle
40	chr14:69822200-69823200	Enhancers	Osteobl	bone
41	chr14:69822200-69823800	Weak transcription	Esophagus	oesophagus
42	chr14:69822200-69824000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr14:69822400-69822800	Weak transcription	Brain Anterior Caudate	brain
44	chr14:69822400-69823000	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr14:69822400-69823000	Enhancers	Adipose Nuclei	Adipose
46	chr14:69822400-69823000	Enhancers	HSMM	muscle
47	chr14:69822400-69823000	Enhancers	NH-A	brain
48	chr14:69822400-69823200	Enhancers	Left Ventricle	heart
49	chr14:69822400-69823200	Enhancers	GM12878-XiMat	blood
50	chr14:69822400-69823800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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