Variant report

Variant	rs897917
Chromosome Location	chr7:150909617-150909618
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150900947..150904902-chr7:150906819..150911270,6	MCF-7	breast:
2	chr7:150888866..150891539-chr7:150907679..150909956,2	K562	blood:
3	chr7:150908780..150913504-chr7:150916695..150920010,4	MCF-7	breast:
4	chr7:150756323..150758655-chr7:150909019..150911809,2	K562	blood:
5	chr7:150905577..150911406-chr7:150912646..150916801,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183016	Chromatin interaction
ENSG00000033050	Chromatin interaction
ENSG00000164889	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1870238	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2242141	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2256864	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2414	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2446065	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2487152	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2487154	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2487155	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2608288	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2608291	0.84[ASN][1000 genomes]
rs2608292	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2608293	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2792434	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2792435	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2792436	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3800792	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3800793	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4725398	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4726009	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6464134	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6949587	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs758249	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs921987	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
3	nsv831188	chr7:150735204-150912875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv609035	chr7:150896223-150955765	Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs897917	ABCF2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150885000-150910000	Weak transcription	Right Atrium	heart
2	chr7:150901800-150910000	Weak transcription	Ovary	ovary
3	chr7:150902000-150910200	Weak transcription	Right Ventricle	heart
4	chr7:150902000-150910400	Weak transcription	Pancreas	Pancrea
5	chr7:150905000-150910000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:150905000-150910000	Weak transcription	Esophagus	oesophagus
7	chr7:150905000-150910800	Weak transcription	Colonic Mucosa	Colon
8	chr7:150905200-150910000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr7:150905200-150910200	Weak transcription	A549	lung
10	chr7:150905400-150912000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr7:150905400-150912000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr7:150905600-150910000	Weak transcription	Brain Germinal Matrix	brain
13	chr7:150905600-150910000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr7:150905600-150911600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr7:150905800-150909800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:150905800-150909800	Weak transcription	HMEC	breast
17	chr7:150905800-150910200	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr7:150905800-150910200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr7:150905800-150910200	Weak transcription	HepG2	liver
20	chr7:150905800-150910800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr7:150906000-150910800	Weak transcription	NHDF-Ad	bronchial
22	chr7:150906000-150911200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr7:150906000-150911800	Weak transcription	Fetal Lung	lung
24	chr7:150906400-150910600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr7:150906600-150910000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr7:150906600-150910800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr7:150906800-150912000	Weak transcription	Fetal Brain Male	brain
28	chr7:150907000-150909800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr7:150907000-150910200	Weak transcription	Colon Smooth Muscle	Colon
30	chr7:150907200-150910000	Weak transcription	Dnd41	blood
31	chr7:150907200-150910200	Weak transcription	Small Intestine	intestine
32	chr7:150907200-150910200	Weak transcription	NH-A	brain
33	chr7:150907200-150911600	Weak transcription	HSMMtube	muscle
34	chr7:150907400-150909800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr7:150907600-150910400	Weak transcription	Brain Angular Gyrus	brain
36	chr7:150907600-150910800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr7:150907600-150910800	Weak transcription	HSMM	muscle
38	chr7:150907600-150911400	Weak transcription	Hela-S3	cervix
39	chr7:150907600-150922600	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr7:150907800-150910000	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr7:150907800-150910200	Weak transcription	HUVEC	blood vessel
42	chr7:150907800-150922200	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr7:150908000-150910000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr7:150908000-150910400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr7:150908000-150911400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr7:150908000-150922600	Strong transcription	Brain Cingulate Gyrus	brain
47	chr7:150908000-150922800	Strong transcription	Brain Hippocampus Middle	brain
48	chr7:150908200-150911800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr7:150908200-150922600	Strong transcription	Primary T cells from cord blood	blood
50	chr7:150908400-150910400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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