Variant report

Variant	rs898135
Chromosome Location	chr15:51698525-51698526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10467923	0.81[JPT][hapmap]
rs12592390	0.86[CHB][hapmap]
rs12592422	0.86[CHB][hapmap]
rs17648128	0.87[CHB][hapmap];0.85[JPT][hapmap];0.84[MKK][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17648140	0.82[GIH][hapmap];0.84[MKK][hapmap];0.84[EUR][1000 genomes]
rs1914020	0.97[ASN][1000 genomes]
rs2445746	0.82[CHB][hapmap]
rs2445751	0.81[CHB][hapmap];0.81[JPT][hapmap];0.95[ASN][1000 genomes]
rs2470192	0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs2470194	0.86[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs4775945	0.86[CHB][hapmap]
rs62018073	0.83[EUR][1000 genomes]
rs6493498	0.91[CHB][hapmap]
rs8034340	0.86[CHB][hapmap]
rs898134	0.95[CEU][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs930919	0.85[CHB][hapmap]
rs9744072	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	esv34532	chr15:51276128-51752856	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv2758382	chr15:51282257-51830339	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv2760031	chr15:51282257-51830339	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	esv2757600	chr15:51352249-51783981	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv904216	chr15:51631479-51739808	Bivalent Enhancer Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv904217	chr15:51695653-51881980	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51687200-51700400	Strong transcription	Placenta	Placenta
2	chr15:51688800-51708600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:51689600-51707000	Weak transcription	Adipose Nuclei	Adipose
4	chr15:51694000-51701800	Weak transcription	Aorta	Aorta
5	chr15:51696400-51706200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr15:51696600-51698800	Enhancers	Brain Germinal Matrix	brain
7	chr15:51696800-51701600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:51697200-51698800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr15:51697800-51698600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr15:51697800-51698600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:51697800-51698600	Enhancers	Fetal Stomach	stomach
12	chr15:51698000-51698600	Enhancers	Brain Substantia Nigra	brain
13	chr15:51698000-51698800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:51698200-51698600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
15	chr15:51698200-51698600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:51698200-51706200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr15:51698200-51709600	Weak transcription	Brain Angular Gyrus	brain
18	chr15:51698400-51698600	Flanking Active TSS	Stomach Smooth Muscle	stomach
19	chr15:51698400-51705600	Weak transcription	Brain Hippocampus Middle	brain
20	chr15:51698400-51708400	Weak transcription	Brain Anterior Caudate	brain

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