Variant report

Variant	rs899363
Chromosome Location	chr8:11332782-11332783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr8:11331590-11332994	IMR90	lung:	n/a	chr8:11332728-11332738

No.	Distal block	Cell Line	Cell type
1	chr8:11322451..11325795-chr8:11329496..11335044,6	MCF-7	breast:
2	chr8:11331911..11334130-chr8:11408479..11410507,2	MCF-7	breast:
3	chr8:11324323..11327573-chr8:11332545..11335174,3	K562	blood:

Variant related genes	Relation type
FAM167A	TF binding region
ENSG00000269954	Chromatin interaction
ENSG00000154319	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11997711	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs2169889	1.00[GIH][hapmap]
rs2245030	1.00[CEU][hapmap]
rs2245126	1.00[CEU][hapmap]
rs2249275	1.00[CEU][hapmap]
rs2252386	1.00[CEU][hapmap]
rs2264304	1.00[CEU][hapmap]
rs2264305	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs2264869	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs2264872	1.00[AMR][1000 genomes]
rs2618439	1.00[CEU][hapmap]
rs2618442	1.00[CEU][hapmap]
rs2729937	1.00[CEU][hapmap]
rs756039	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7829697	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7830501	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1030756	chr8:11292073-11332782	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1022074	chr8:11292256-11394526	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2762725	chr8:11322997-11350721	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11325200-11335000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:11330200-11333600	Enhancers	Stomach Mucosa	stomach
3	chr8:11330400-11332800	Enhancers	Pancreas	Pancrea
4	chr8:11331000-11332800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr8:11331000-11332800	Enhancers	Liver	Liver
6	chr8:11331000-11334000	Enhancers	Placenta	Placenta
7	chr8:11331600-11332800	Enhancers	HMEC	breast
8	chr8:11331600-11332800	Enhancers	NHLF	lung
9	chr8:11331600-11333600	Enhancers	HSMMtube	muscle
10	chr8:11331800-11332800	Enhancers	HUVEC	blood vessel
11	chr8:11331800-11333000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr8:11332000-11332800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr8:11332000-11333000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr8:11332200-11332800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:11332200-11332800	Enhancers	Lung	lung
16	chr8:11332200-11332800	Enhancers	NH-A	brain
17	chr8:11332200-11333600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:11332200-11333600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr8:11332200-11333600	Enhancers	A549	lung
20	chr8:11332200-11333800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:11332200-11333800	Enhancers	HSMM	muscle
22	chr8:11332200-11334200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:11332200-11335200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:11332400-11333600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr8:11332400-11333800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr8:11332400-11335000	Enhancers	Gastric	stomach
27	chr8:11332600-11332800	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr8:11332600-11332800	Enhancers	Osteobl	bone
29	chr8:11332600-11333000	Enhancers	NHEK	skin
30	chr8:11332600-11333400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr8:11332600-11333600	Enhancers	Muscle Satellite Cultured Cells	--
32	chr8:11332600-11334000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr8:11332600-11334000	Weak transcription	Esophagus	oesophagus
34	chr8:11332600-11335000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr8:11332600-11336400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr8:11332600-11336600	Weak transcription	NHDF-Ad	bronchial
37	chr8:11332600-11337400	Weak transcription	Fetal Thymus	thymus

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