Variant report

Variant	rs899465
Chromosome Location	chr15:33244672-33244673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33244172..33246376-chr15:33247943..33250082,2	K562	blood:
2	chr15:33244592..33247228-chr15:33248722..33251718,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10048026	0.89[AFR][1000 genomes]
rs2956150	0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs347916	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs347917	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs347918	1.00[YRI][hapmap]
rs347919	0.85[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs347920	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs347928	0.89[YRI][hapmap]
rs347947	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs347948	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs347949	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs347953	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs347954	0.83[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs347955	0.89[YRI][hapmap]
rs35530263	0.92[AFR][1000 genomes]
rs554839	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs556825	1.00[YRI][hapmap];0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv903978	chr15:33144202-33308641	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1041609	chr15:33148035-33355999	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv542339	chr15:33148035-33355999	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv903980	chr15:33149087-33264201	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv568917	chr15:33167171-33304172	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
12	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33226600-33245400	Weak transcription	Stomach Mucosa	stomach
2	chr15:33232800-33263400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:33234400-33248600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:33235000-33248200	Weak transcription	Aorta	Aorta
5	chr15:33238200-33245000	Weak transcription	NHLF	lung
6	chr15:33238200-33259600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:33242800-33245200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:33243600-33246200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:33243600-33246600	Enhancers	Fetal Stomach	stomach
10	chr15:33243600-33247000	Enhancers	NHDF-Ad	bronchial
11	chr15:33243600-33247800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:33243800-33245200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr15:33243800-33258800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:33243800-33264400	Weak transcription	Gastric	stomach
15	chr15:33244000-33245400	Enhancers	Spleen	Spleen
16	chr15:33244000-33245600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:33244000-33246400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:33244000-33249200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:33244200-33244800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr15:33244200-33244800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr15:33244200-33244800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:33244200-33244800	Weak transcription	Fetal Lung	lung
23	chr15:33244200-33245200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr15:33244200-33245400	Weak transcription	Right Atrium	heart
25	chr15:33244200-33246000	Enhancers	Fetal Muscle Leg	muscle
26	chr15:33244200-33246600	Enhancers	Stomach Smooth Muscle	stomach
27	chr15:33244200-33253800	Weak transcription	Lung	lung
28	chr15:33244400-33244800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:33244400-33244800	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr15:33244400-33244800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr15:33244400-33245200	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr15:33244400-33245200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr15:33244400-33245400	Weak transcription	Osteobl	bone
34	chr15:33244400-33245800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr15:33244400-33246600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:33244400-33247600	Enhancers	Fetal Kidney	kidney
37	chr15:33244600-33245000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr15:33244600-33245800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr15:33244600-33245800	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr15:33244600-33246200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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