Variant report

Variant	rs899522
Chromosome Location	chr15:92814457-92814458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11630700	0.86[EUR][1000 genomes]
rs11631126	0.86[EUR][1000 genomes]
rs11632217	0.86[EUR][1000 genomes]
rs11632525	0.84[EUR][1000 genomes]
rs11633492	0.91[EUR][1000 genomes]
rs11633660	0.84[EUR][1000 genomes]
rs11634765	0.90[EUR][1000 genomes]
rs11634942	0.91[EUR][1000 genomes]
rs11635853	1.00[CEU][hapmap];0.86[TSI][hapmap];0.92[EUR][1000 genomes]
rs11638294	0.95[EUR][1000 genomes]
rs11638327	0.89[EUR][1000 genomes]
rs16946658	0.86[EUR][1000 genomes]
rs16946659	0.86[EUR][1000 genomes]
rs16946674	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17702313	0.83[CHD][hapmap]
rs4485305	0.86[ASN][1000 genomes]
rs4777900	0.97[ASN][1000 genomes]
rs55791132	0.90[EUR][1000 genomes]
rs56280645	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs899522	FURIN	cis	cerebellum	SCAN
rs899522	MESP1	cis	cerebellum	SCAN
rs899522	SLCO3A1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92812800-92814600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:92813200-92822800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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