Variant report

Variant	rs900803
Chromosome Location	chr15:74611488-74611489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74500084..74502169-chr15:74610783..74612337,2	K562	blood:

Variant related genes	Relation type
ENSG00000137868	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2930303	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2959021	1.00[AMR][1000 genomes]
rs58102371	1.00[AMR][1000 genomes]
rs931274	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74604200-74613400	Enhancers	Placenta	Placenta
2	chr15:74604400-74613200	Enhancers	Fetal Thymus	thymus
3	chr15:74604800-74623400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr15:74605200-74613400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr15:74606200-74612600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:74606200-74613400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:74606400-74613400	Enhancers	Fetal Muscle Leg	muscle
8	chr15:74606600-74613400	Enhancers	Fetal Brain Female	brain
9	chr15:74607000-74613000	Enhancers	Primary hematopoietic stem cells	blood
10	chr15:74607200-74611600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:74607200-74611800	Enhancers	Left Ventricle	heart
12	chr15:74607200-74612000	Enhancers	Right Ventricle	heart
13	chr15:74607200-74612600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:74607200-74613000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr15:74607200-74613200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr15:74607200-74613400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr15:74607400-74613200	Enhancers	Adipose Nuclei	Adipose
18	chr15:74607600-74611600	Enhancers	HSMMtube	muscle
19	chr15:74607600-74613400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:74607800-74612000	Enhancers	NHLF	lung
21	chr15:74607800-74613000	Enhancers	Fetal Stomach	stomach
22	chr15:74608000-74612600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:74608000-74613000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr15:74608200-74613200	Enhancers	GM12878-XiMat	blood
25	chr15:74608400-74613400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr15:74608600-74611600	Weak transcription	Primary T cells from cord blood	blood
27	chr15:74608600-74611800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr15:74608800-74611600	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr15:74608800-74612200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr15:74608800-74613200	Enhancers	Stomach Smooth Muscle	stomach
31	chr15:74609200-74613000	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr15:74609600-74612000	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr15:74609600-74612200	Enhancers	Stomach Mucosa	stomach
34	chr15:74609600-74612800	Enhancers	Fetal Intestine Small	intestine
35	chr15:74609600-74613000	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr15:74609600-74613200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr15:74609800-74611800	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr15:74609800-74611800	Enhancers	Fetal Lung	lung
39	chr15:74609800-74612400	Enhancers	Placenta Amnion	Placenta Amnion
40	chr15:74609800-74612400	Enhancers	HSMM	muscle
41	chr15:74609800-74612800	Enhancers	Primary B cells from peripheral blood	blood
42	chr15:74609800-74612800	Enhancers	Ovary	ovary
43	chr15:74609800-74613000	Enhancers	H1 Cell Line	embryonic stem cell
44	chr15:74609800-74613000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr15:74609800-74613200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr15:74610000-74612000	Enhancers	Right Atrium	heart
47	chr15:74610000-74612400	Enhancers	Brain Anterior Caudate	brain
48	chr15:74610200-74611600	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr15:74610400-74611600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr15:74610400-74611600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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