Variant report

Variant	rs900896
Chromosome Location	chr8:68528197-68528198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68255511..68257426-chr8:68527700..68529759,2	MCF-7	breast:
2	chr8:68521880..68524788-chr8:68525986..68528852,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066777	Chromatin interaction
ENSG00000271966	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10089689	0.80[AMR][1000 genomes]
rs10100275	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10100583	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10957393	0.80[CEU][hapmap]
rs1351515	0.82[CEU][hapmap];0.86[TSI][hapmap]
rs17346597	0.80[AMR][1000 genomes]
rs2114050	0.91[CEU][hapmap];0.89[MEX][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2162146	0.81[CEU][hapmap]
rs2380436	0.81[CEU][hapmap]
rs379085	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs387671	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs422799	0.82[JPT][hapmap]
rs427451	0.80[EUR][1000 genomes]
rs443841	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs450738	0.82[JPT][hapmap]
rs582424	0.82[JPT][hapmap]
rs6472325	0.83[CEU][hapmap]
rs6472326	0.83[CEU][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap]
rs6472327	0.86[CEU][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs655505	0.80[AMR][1000 genomes]
rs6998443	0.82[JPT][hapmap];0.83[MEX][hapmap]
rs7012026	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7813074	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7814911	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7823371	0.83[CEU][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap];0.81[EUR][1000 genomes]
rs7841258	0.95[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7842038	0.86[CEU][hapmap];0.86[TSI][hapmap]
rs9643584	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1032986	chr8:68468044-68789883	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv530518	chr8:68521420-68973114	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs900896	MTFR1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68516200-68539400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:68527400-68528200	Weak transcription	Primary B cells from cord blood	blood
3	chr8:68527800-68528200	Enhancers	Primary B cells from peripheral blood	blood

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