Variant report

Variant	rs900903
Chromosome Location	chr4:152931057-152931058
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10517559	0.81[JPT][hapmap]
rs11099838	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1531917	0.81[JPT][hapmap];0.83[TSI][hapmap]
rs1872314	0.81[JPT][hapmap]
rs34493397	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35771940	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4696309	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6535830	0.81[JPT][hapmap]
rs975820	0.81[JPT][hapmap];0.84[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152921400-152931600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:152928000-152932200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:152929200-152932000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:152929200-152932400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr4:152929200-152932400	Enhancers	Fetal Brain Male	brain
6	chr4:152929400-152931200	Enhancers	Fetal Kidney	kidney
7	chr4:152929400-152932400	Enhancers	Fetal Brain Female	brain
8	chr4:152929600-152936600	Enhancers	Fetal Thymus	thymus
9	chr4:152929800-152931200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:152929800-152932200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:152930000-152931800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr4:152930000-152932000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr4:152930000-152932200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:152930200-152931200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:152930200-152931600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:152930200-152931600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:152930200-152931800	Enhancers	Right Atrium	heart
18	chr4:152930200-152932000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr4:152930200-152932000	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr4:152930200-152932200	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr4:152930200-152932200	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr4:152930200-152932200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr4:152930200-152932400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr4:152930200-152933200	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr4:152930200-152933600	Enhancers	Primary T cells from cord blood	blood
26	chr4:152930200-152933800	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr4:152930400-152931600	Enhancers	H9 Cell Line	embryonic stem cell
28	chr4:152930400-152932200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr4:152930400-152932200	Enhancers	Fetal Heart	heart
30	chr4:152930400-152932200	Enhancers	Fetal Muscle Leg	muscle
31	chr4:152930400-152932400	Enhancers	H1 Cell Line	embryonic stem cell
32	chr4:152930400-152933800	Enhancers	Thymus	Thymus
33	chr4:152930600-152931400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr4:152930600-152931800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr4:152930600-152931800	Weak transcription	Brain Germinal Matrix	brain
36	chr4:152930600-152932400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr4:152930600-152933400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr4:152930600-152933800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr4:152930800-152931400	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr4:152930800-152932000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr4:152930800-152932000	Enhancers	Colon Smooth Muscle	Colon
42	chr4:152930800-152933400	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr4:152930800-152934000	Enhancers	Primary T cells fromperipheralblood	blood
44	chr4:152931000-152931200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
45	chr4:152931000-152931200	Bivalent Enhancer	Adipose Nuclei	Adipose
46	chr4:152931000-152931600	Enhancers	HSMMtube	muscle
47	chr4:152931000-152932200	Enhancers	Fetal Stomach	stomach

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