Variant report

Variant	rs902194
Chromosome Location	chr6:34104784-34104785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1150782	1.00[AMR][1000 genomes]
rs1187120	1.00[AMR][1000 genomes]
rs1187127	1.00[AMR][1000 genomes]
rs1187128	1.00[AMR][1000 genomes]
rs11970029	1.00[YRI][hapmap]
rs1759635	1.00[AMR][1000 genomes]
rs1759638	1.00[AMR][1000 genomes]
rs1776893	1.00[AMR][1000 genomes]
rs1873245	1.00[AMR][1000 genomes]
rs1963283	1.00[AMR][1000 genomes]
rs2451336	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2499723	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2797965	1.00[AMR][1000 genomes]
rs6899326	1.00[AMR][1000 genomes]
rs914812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv432881	chr6:34026522-34213822	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv885780	chr6:34050917-34131376	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv462902	chr6:34056726-34195011	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv602862	chr6:34056726-34195011	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34099600-34106200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:34100200-34106000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:34100800-34105000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:34101600-34110200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:34101800-34108800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr6:34102000-34107400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:34102200-34105000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:34103800-34110400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:34104000-34107600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:34104400-34105400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:34104400-34107800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:34104400-34111400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:34104600-34106000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:34104600-34106000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:34104600-34106400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr6:34104600-34107800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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