Variant report

Variant	rs902540
Chromosome Location	chr16:82277382-82277383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82276132..82278631-chr16:82297407..82299640,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1011432	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11640005	0.86[ASN][1000 genomes]
rs11640213	0.81[EUR][1000 genomes]
rs11862388	0.81[EUR][1000 genomes]
rs1844721	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1844722	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1844727	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs1979649	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs1979650	0.81[EUR][1000 genomes]
rs1979652	0.81[EUR][1000 genomes]
rs1979653	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs2317884	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs2932809	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2932814	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs2932817	0.81[EUR][1000 genomes]
rs2932818	0.81[EUR][1000 genomes]
rs2932839	0.84[CEU][hapmap]
rs2932840	0.83[CEU][hapmap]
rs2967331	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2967333	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2967335	0.86[ASN][1000 genomes]
rs2967336	0.84[EUR][1000 genomes]
rs2967337	0.82[EUR][1000 genomes]
rs2967338	0.81[EUR][1000 genomes]
rs2967339	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs2967340	0.82[CEU][hapmap]
rs2967345	0.81[EUR][1000 genomes]
rs2967346	0.81[EUR][1000 genomes]
rs2967347	0.81[EUR][1000 genomes]
rs2967348	0.81[EUR][1000 genomes]
rs2967410	0.81[EUR][1000 genomes]
rs66765750	0.81[EUR][1000 genomes]
rs7500585	0.81[EUR][1000 genomes]
rs7500862	0.81[EUR][1000 genomes]
rs902541	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs902542	0.82[CEU][hapmap]
rs9932036	0.81[EUR][1000 genomes]
rs9941073	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv833302	chr16:82188351-82363863	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv1844598	chr16:82195234-82429790	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	esv1847414	chr16:82195234-82429790	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv532600	chr16:82197554-82314289	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv907015	chr16:82203758-82284056	Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
10	nsv907016	chr16:82235303-82280548	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv522270	chr16:82252003-82325530	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1067008	chr16:82273372-82287173	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82277200-82278000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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