Variant report

Variant	rs905008
Chromosome Location	chr4:7252854-7252855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1969073	1.00[AMR][1000 genomes]
rs34041281	1.00[AMR][1000 genomes]
rs34066319	1.00[EUR][1000 genomes]
rs34295398	1.00[AMR][1000 genomes]
rs34533808	1.00[AMR][1000 genomes]
rs35119317	1.00[AMR][1000 genomes]
rs35138160	1.00[AMR][1000 genomes]
rs35520579	1.00[AMR][1000 genomes]
rs35523377	1.00[AMR][1000 genomes]
rs35713667	1.00[AMR][1000 genomes]
rs36018305	1.00[AMR][1000 genomes]
rs36084098	1.00[AMR][1000 genomes]
rs57790015	1.00[EUR][1000 genomes]
rs905007	1.00[AMR][1000 genomes]
rs905009	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34033	chr4:6973270-7390621	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv2757919	chr4:6988148-7269901	Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	esv2759221	chr4:6988148-7269901	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv428436	chr4:6988148-7269901	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv829850	chr4:7112509-7314016	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv432556	chr4:7174993-7391948	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv878541	chr4:7211197-7341243	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv878542	chr4:7214696-7276541	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv461198	chr4:7219933-7265635	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv593565	chr4:7219933-7265635	ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv4218	chr4:7225196-7270057	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7246000-7253200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:7251400-7253000	Enhancers	Fetal Thymus	thymus
3	chr4:7251600-7253000	Enhancers	Psoas Muscle	Psoas
4	chr4:7252000-7253000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:7252000-7254200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr4:7252200-7253000	Enhancers	Brain Angular Gyrus	brain
7	chr4:7252400-7253400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr4:7252400-7253600	Enhancers	Rectal Smooth Muscle	rectum
9	chr4:7252600-7253000	Enhancers	Adipose Nuclei	Adipose
10	chr4:7252600-7253000	Flanking Active TSS	Brain Substantia Nigra	brain
11	chr4:7252600-7253600	Enhancers	Brain Cingulate Gyrus	brain
12	chr4:7252600-7254000	Enhancers	Fetal Stomach	stomach
13	chr4:7252600-7261800	Weak transcription	Fetal Brain Female	brain
14	chr4:7252600-7262400	Weak transcription	Fetal Brain Male	brain
15	chr4:7252800-7253000	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:7252800-7253000	Enhancers	Fetal Lung	lung
17	chr4:7252800-7253000	Flanking Active TSS	Stomach Smooth Muscle	stomach
18	chr4:7252800-7253200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:7252800-7253400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:7252800-7253400	Enhancers	Brain Anterior Caudate	brain
21	chr4:7252800-7253400	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr4:7252800-7253400	Enhancers	Colon Smooth Muscle	Colon
23	chr4:7252800-7253600	Enhancers	Brain Hippocampus Middle	brain
24	chr4:7252800-7254000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr4:7252800-7254400	Weak transcription	Brain Germinal Matrix	brain
26	chr4:7252800-7255400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr4:7252800-7255400	Bivalent Enhancer	Fetal Muscle Leg	muscle
28	chr4:7252800-7255400	Weak transcription	HSMM	muscle
29	chr4:7252800-7256800	Weak transcription	HSMMtube	muscle
30	chr4:7252800-7257800	Weak transcription	Ovary	ovary

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