Variant report

Variant	rs905353
Chromosome Location	chr8:49428333-49428334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:49410603..49416175-chr8:49423365..49428715,9	MCF-7	breast:
2	chr8:49426615..49429308-chr8:49832936..49835027,3	MCF-7	breast:
3	chr8:49427161..49428765-chr8:49437456..49440165,2	MCF-7	breast:
4	chr8:49420032..49424376-chr8:49425636..49428777,6	MCF-7	breast:
5	chr8:49426044..49428743-chr8:49433288..49436593,3	K562	blood:
6	chr8:49423563..49425293-chr8:49427104..49428839,2	MCF-7	breast:
7	chr8:49426903..49428543-chr8:49456209..49459000,2	MCF-7	breast:
8	chr8:49425999..49428743-chr8:49432404..49436593,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EFCAB1-4	chr8:49428328-49428913	XLOC_007080

No data

Variant related genes	Relation type
ENSG00000019549	Chromatin interaction

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49427400-49428400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr8:49427600-49432000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr8:49427600-49432200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:49427600-49433400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:49427800-49428400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:49427800-49428400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
7	chr8:49427800-49428600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:49427800-49428800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:49427800-49435000	Weak transcription	Left Ventricle	heart
10	chr8:49427800-49435000	Weak transcription	Pancreas	Pancrea
11	chr8:49427800-49438200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:49428000-49428400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr8:49428000-49428400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr8:49428000-49428400	Enhancers	Brain Angular Gyrus	brain
15	chr8:49428000-49428400	Enhancers	Colon Smooth Muscle	Colon
16	chr8:49428000-49428400	Flanking Active TSS	NHDF-Ad	bronchial
17	chr8:49428000-49428600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:49428000-49428600	Weak transcription	Ovary	ovary
19	chr8:49428000-49428600	Enhancers	HSMM	muscle
20	chr8:49428000-49428800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr8:49428000-49428800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr8:49428000-49428800	Enhancers	Fetal Kidney	kidney
23	chr8:49428000-49428800	Enhancers	Fetal Muscle Leg	muscle
24	chr8:49428000-49429000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr8:49428000-49429400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr8:49428000-49429400	Enhancers	Fetal Lung	lung
27	chr8:49428000-49429600	Weak transcription	GM12878-XiMat	blood
28	chr8:49428000-49430000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr8:49428000-49430200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr8:49428000-49432000	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr8:49428000-49432200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr8:49428000-49432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr8:49428000-49433400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr8:49428000-49433400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr8:49428000-49433600	Weak transcription	Esophagus	oesophagus
36	chr8:49428000-49435200	Weak transcription	Aorta	Aorta
37	chr8:49428000-49435200	Weak transcription	Placenta	Placenta
38	chr8:49428000-49435600	Weak transcription	Right Ventricle	heart
39	chr8:49428000-49438400	Weak transcription	Psoas Muscle	Psoas
40	chr8:49428000-49448600	Weak transcription	Right Atrium	heart
41	chr8:49428200-49428400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr8:49428200-49428400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr8:49428200-49428400	Enhancers	Brain Anterior Caudate	brain
44	chr8:49428200-49428400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr8:49428200-49428400	Enhancers	A549	lung
46	chr8:49428200-49428400	Enhancers	NH-A	brain
47	chr8:49428200-49428600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr8:49428200-49428600	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr8:49428200-49428600	Enhancers	Adipose Nuclei	Adipose
50	chr8:49428200-49428800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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