Variant report

Variant	rs905551
Chromosome Location	chr11:19096299-19096300
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:19094423..19096324-chr11:19165752..19167827,2	MCF-7	breast:
2	chr11:19092484..19094846-chr11:19096156..19098835,2	MCF-7	breast:
3	chr11:19093295..19097207-chr11:19260781..19264758,3	K562	blood:

Variant related genes	Relation type
ENSG00000129173	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2062819	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4494286	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4757750	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv897030	chr11:19049478-19106045	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19093400-19097000	Enhancers	Stomach Mucosa	stomach
2	chr11:19093400-19098200	Weak transcription	HUVEC	blood vessel
3	chr11:19093400-19098800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:19093600-19098800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:19094200-19096400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:19095000-19096400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr11:19095000-19096400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr11:19095200-19101000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:19095200-19101000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:19095200-19104000	Weak transcription	Esophagus	oesophagus
11	chr11:19095400-19096400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr11:19095600-19096400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr11:19095800-19098200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:19095800-19098800	Weak transcription	Adipose Nuclei	Adipose
15	chr11:19096000-19096400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:19096200-19096400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr11:19096200-19098200	Weak transcription	Gastric	stomach
18	chr11:19096200-19098400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:19096200-19101000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:19096200-19102200	Weak transcription	Pancreas	Pancrea

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