Variant report

Variant	rs906363
Chromosome Location	chr1:212858797-212858798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:212856876..212859074-chr1:212871826..212873912,2	K562	blood:
2	chr1:212858272..212860534-chr1:212861988..212863747,2	K562	blood:
3	chr1:212856855..212858947-chr1:212862526..212864877,2	MCF-7	breast:
4	chr1:212640637..212643288-chr1:212857721..212859450,2	K562	blood:
5	chr1:212856703..212859262-chr1:212873284..212875727,3	K562	blood:
6	chr1:212851040..212855618-chr1:212856353..212859707,5	MCF-7	breast:
7	chr1:212855556..212859090-chr1:212860811..212864685,4	K562	blood:
8	chr1:212857319..212860671-chr1:212865664..212868851,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000224535	Chromatin interaction
ENSG00000123685	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12068304	0.90[EUR][1000 genomes]
rs12726783	0.89[ASN][1000 genomes]
rs12754070	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17019553	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17019556	0.89[ASN][1000 genomes]
rs2884573	0.81[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35027464	1.00[ASN][1000 genomes]
rs4026627	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55846918	0.89[ASN][1000 genomes]
rs56283090	0.89[ASN][1000 genomes]
rs59691875	1.00[ASN][1000 genomes]
rs59746440	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59877390	1.00[ASN][1000 genomes]
rs72756401	0.89[ASN][1000 genomes]
rs72758412	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs882410	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs906364	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9658807	1.00[CHB][hapmap];0.81[GIH][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549139	chr1:212332294-212876902	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	nsv1013110	chr1:212555764-212948092	Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
3	nsv535287	chr1:212555764-212948092	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
4	nsv428588	chr1:212705588-212862875	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
5	esv1829918	chr1:212828460-212874731	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212853800-212860000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:212856000-212867200	Weak transcription	Brain Anterior Caudate	brain
3	chr1:212856200-212862600	Weak transcription	Lung	lung
4	chr1:212856600-212861600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:212857000-212867000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:212857200-212860600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr1:212857200-212862000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:212857200-212862200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:212857200-212871600	Weak transcription	Dnd41	blood
10	chr1:212857600-212859000	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr1:212857600-212863200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr1:212857600-212869800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr1:212857800-212859200	Enhancers	GM12878-XiMat	blood
14	chr1:212857800-212866200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:212858000-212860000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
16	chr1:212858200-212858800	Enhancers	Adipose Nuclei	Adipose
17	chr1:212858200-212858800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr1:212858200-212859400	Weak transcription	Spleen	Spleen
19	chr1:212858200-212859800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:212858400-212859000	Enhancers	Placenta	Placenta
21	chr1:212858400-212859200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr1:212858400-212859600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr1:212858600-212861600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr1:212858600-212872200	Weak transcription	Gastric	stomach

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