Variant report

Variant	rs906634
Chromosome Location	chr1:92035123-92035124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:92030890..92033569-chr1:92034151..92036238,3	K562	blood:
2	chr1:92029227..92031901-chr1:92033663..92035245,2	K562	blood:
3	chr1:91965732..91968185-chr1:92033683..92036118,4	K562	blood:

Variant related genes	Relation type
ENSG00000097046	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10747457	0.97[EUR][1000 genomes]
rs10782964	0.98[EUR][1000 genomes]
rs2391018	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6689719	0.89[CEU][hapmap]
rs7514544	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7517168	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs925191	0.98[EUR][1000 genomes]
rs925192	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92023200-92035200	Weak transcription	Spleen	Spleen
2	chr1:92031000-92035200	Weak transcription	Lung	lung
3	chr1:92031000-92035200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:92031000-92037400	Weak transcription	Colonic Mucosa	Colon
5	chr1:92031200-92035400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:92031200-92035400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr1:92031200-92035400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr1:92031200-92037400	Weak transcription	Fetal Thymus	thymus
9	chr1:92031400-92035200	Weak transcription	Esophagus	oesophagus
10	chr1:92031400-92035200	Weak transcription	Placenta	Placenta
11	chr1:92031400-92035400	Weak transcription	Colon Smooth Muscle	Colon
12	chr1:92032000-92035400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:92032200-92040800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:92033400-92036400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:92033400-92038200	Enhancers	Fetal Heart	heart
16	chr1:92034600-92035200	Enhancers	Osteobl	bone
17	chr1:92034600-92035400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:92034600-92035400	Flanking Active TSS	NHDF-Ad	bronchial
19	chr1:92034600-92035600	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr1:92034600-92035800	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr1:92034600-92036000	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr1:92034600-92036000	Enhancers	HMEC	breast
23	chr1:92034600-92036400	Enhancers	NHEK	skin
24	chr1:92034600-92037400	Enhancers	NHLF	lung
25	chr1:92034600-92037800	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr1:92034800-92035400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr1:92034800-92035400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
28	chr1:92034800-92035600	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr1:92034800-92035600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr1:92034800-92035600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr1:92034800-92035800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:92034800-92035800	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr1:92034800-92035800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr1:92034800-92035800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr1:92034800-92035800	Enhancers	Hela-S3	cervix
36	chr1:92034800-92036000	Enhancers	K562	blood
37	chr1:92034800-92036200	Enhancers	Muscle Satellite Cultured Cells	--
38	chr1:92034800-92036200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr1:92034800-92036200	Enhancers	Fetal Stomach	stomach
40	chr1:92034800-92036200	Enhancers	Placenta Amnion	Placenta Amnion
41	chr1:92034800-92036600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr1:92034800-92036800	Enhancers	Psoas Muscle	Psoas
43	chr1:92034800-92038200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr1:92034800-92038400	Enhancers	Adipose Nuclei	Adipose
45	chr1:92035000-92035200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr1:92035000-92035200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr1:92035000-92035200	Enhancers	HSMM	muscle
48	chr1:92035000-92035400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr1:92035000-92035800	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr1:92035000-92035800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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