Variant report

Variant	rs906648
Chromosome Location	chr2:142488529-142488530
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6730502	0.81[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs754943	0.80[CEU][hapmap]
rs874295	0.80[CEU][hapmap]
rs978203	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs906648	SPOPL	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142486400-142494600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr2:142486400-142501600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:142486600-142492200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:142486600-142494000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:142486800-142490800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr2:142486800-142492000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr2:142486800-142492200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:142487000-142492000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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