Variant report

Variant	rs906650
Chromosome Location	chr2:142486891-142486892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10496891	1.00[CHB][hapmap]
rs10496892	1.00[CHB][hapmap]
rs12464909	1.00[CHB][hapmap]
rs12477186	1.00[CHB][hapmap]
rs13017029	1.00[CHB][hapmap]
rs13017440	0.82[CHB][hapmap]
rs1437334	1.00[CHB][hapmap]
rs2381154	1.00[CHB][hapmap]
rs6429919	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142485600-142487000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr2:142486400-142494600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:142486400-142501600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:142486600-142492200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr2:142486600-142494000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:142486800-142490800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr2:142486800-142492000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr2:142486800-142492200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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