Variant report

Variant	rs907096
Chromosome Location	chr12:104950249-104950250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:104950099..104952735-chr12:104953962..104957251,3	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1005922	0.84[ASN][1000 genomes]
rs1553840	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17035819	0.85[ASN][1000 genomes]
rs1704904	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1704908	0.85[AMR][1000 genomes]
rs1795863	0.82[AMR][1000 genomes]
rs1795874	0.85[AMR][1000 genomes]
rs2141861	0.84[ASN][1000 genomes]
rs2665749	0.89[AMR][1000 genomes]
rs6539157	0.84[ASN][1000 genomes]
rs6539158	0.84[ASN][1000 genomes]
rs6539159	0.84[ASN][1000 genomes]
rs6539160	0.84[ASN][1000 genomes]
rs879388	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832504	chr12:104853331-105028245	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1035364	chr12:104948307-105003705	Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104930200-104957600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr12:104939200-104951200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:104940600-104958000	Weak transcription	K562	blood
4	chr12:104941200-104951400	Weak transcription	Thymus	Thymus
5	chr12:104941400-104959400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr12:104942000-104957600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr12:104944400-104957600	Weak transcription	A549	lung
8	chr12:104944800-104951600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr12:104947200-104950800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr12:104947400-104958000	Weak transcription	Primary T cells from cord blood	blood
11	chr12:104947600-104952800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr12:104947800-104954600	Weak transcription	Primary B cells from cord blood	blood
13	chr12:104947800-104961200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr12:104947800-104964400	Weak transcription	Aorta	Aorta
15	chr12:104948000-104952600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr12:104948000-104954200	Weak transcription	GM12878-XiMat	blood
17	chr12:104948000-104957600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr12:104948200-104951600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr12:104948200-104954800	Weak transcription	Spleen	Spleen
20	chr12:104948800-104951000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr12:104949000-104959400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr12:104949000-104960400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr12:104949000-104961400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr12:104949200-104951400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr12:104949400-104950400	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr12:104949400-104951000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr12:104949400-104957200	Strong transcription	Dnd41	blood
28	chr12:104949600-104950800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr12:104949600-104957800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr12:104949600-104968800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr12:104949800-104950800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr12:104949800-104950800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr12:104949800-104951000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr12:104949800-104951000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr12:104949800-104951600	Weak transcription	Fetal Thymus	thymus
36	chr12:104949800-104951800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr12:104949800-104954400	Weak transcription	Right Ventricle	heart
38	chr12:104949800-104957800	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr12:104949800-104957800	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr12:104949800-104963400	Weak transcription	Lung	lung
41	chr12:104950000-104950800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr12:104950000-104953200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr12:104950000-104957600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr12:104950000-104958000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr12:104950000-104978800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr12:104950200-104951000	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr12:104950200-104951200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr12:104950200-104952000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr12:104950200-104958000	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr12:104950200-104959200	Weak transcription	Stomach Smooth Muscle	stomach

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