Variant report

Variant	rs907292
Chromosome Location	chr3:141739379-141739380
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141732044..141735482-chr3:141738671..141741539,4	MCF-7	breast:
2	chr3:141738796..141742970-chr3:141745258..141748964,7	K562	blood:

Variant related genes	Relation type
ENSG00000114126	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2862129	0.81[AMR][1000 genomes]
rs4484207	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1002446	chr3:141719169-142070290	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv2757892	chr3:141728870-142129836	Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	esv2759182	chr3:141728870-142129836	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv877553	chr3:141732321-141786073	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv877554	chr3:141735532-141781890	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141678800-141745600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr3:141682800-141745800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:141682800-141746200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr3:141683800-141746600	Weak transcription	Lung	lung
5	chr3:141706400-141746200	Weak transcription	Fetal Lung	lung
6	chr3:141708600-141745200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:141716000-141745600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:141720200-141746600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:141720400-141742600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:141722600-141745400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:141723400-141745400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:141723400-141745400	Weak transcription	Fetal Kidney	kidney
13	chr3:141724400-141741200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr3:141724400-141745000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:141728200-141746200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:141731400-141745400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:141733200-141746200	Weak transcription	Adipose Nuclei	Adipose
18	chr3:141733400-141745800	Weak transcription	Fetal Stomach	stomach
19	chr3:141733400-141746600	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:141733600-141747200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr3:141734000-141745400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr3:141734200-141745400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr3:141734600-141746200	Weak transcription	NH-A	brain
24	chr3:141735000-141746200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr3:141735800-141746200	Weak transcription	Right Ventricle	heart
26	chr3:141736000-141740800	Weak transcription	Thymus	Thymus
27	chr3:141736800-141740000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:141737800-141746200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr3:141738000-141739400	Enhancers	Fetal Intestine Large	intestine
30	chr3:141738000-141741000	Weak transcription	Brain Hippocampus Middle	brain
31	chr3:141738200-141739400	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr3:141738200-141739400	Genic enhancers	Fetal Intestine Small	intestine
33	chr3:141738200-141739800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr3:141738200-141742000	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr3:141738200-141742600	Enhancers	Primary hematopoietic stem cells	blood
36	chr3:141738400-141739400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr3:141738400-141739400	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr3:141738400-141740000	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr3:141738400-141740200	Enhancers	HUVEC	blood vessel
40	chr3:141738400-141741600	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr3:141738600-141739400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr3:141738600-141739400	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr3:141738600-141739400	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr3:141738600-141739400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr3:141738600-141739400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr3:141738600-141739800	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr3:141738600-141740000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr3:141738600-141740200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr3:141738600-141740400	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr3:141738600-141742400	Genic enhancers	Dnd41	blood

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