Variant report

Variant	rs907510
Chromosome Location	chr4:54469418-54469419
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1079230	0.81[EUR][1000 genomes]
rs1107027	0.81[EUR][1000 genomes]
rs1126328	0.81[EUR][1000 genomes]
rs11731437	0.90[JPT][hapmap]
rs1369351	0.81[EUR][1000 genomes]
rs1477876	0.88[EUR][1000 genomes]
rs1972815	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs2572283	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2590780	0.81[EUR][1000 genomes]
rs2590781	0.81[EUR][1000 genomes]
rs2590816	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs2616386	0.81[EUR][1000 genomes]
rs2668516	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2668557	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2668566	0.84[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv437918	chr4:54451175-54483569	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54463800-54471800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:54468200-54470600	Weak transcription	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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