Variant report

Variant	rs908095
Chromosome Location	chr12:59913846-59913847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11609644	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11615456	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12422902	0.94[CEU][hapmap];0.81[MKK][hapmap];0.92[TSI][hapmap];0.86[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12427190	1.00[CEU][hapmap];0.86[YRI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12580155	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12580166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17559098	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17640150	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17640963	0.85[EUR][1000 genomes]
rs1874638	1.00[CEU][hapmap];0.92[TSI][hapmap];0.86[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3935589	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4399358	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4399359	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4760295	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4760296	1.00[CEU][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs4760297	0.85[EUR][1000 genomes]
rs5026370	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61933351	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61936271	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61936275	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61936276	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61936294	0.85[EUR][1000 genomes]
rs7296400	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73109969	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7315308	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7975081	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7979792	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs954322	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs954323	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762982	chr12:59659871-60000135	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1042271	chr12:59668468-59993468	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1038467	chr12:59680717-59999008	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv541507	chr12:59680717-59999008	Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1049084	chr12:59700333-59993468	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv899129	chr12:59820966-59941423	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv469413	chr12:59856161-59916767	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv899130	chr12:59895548-59970631	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv559055	chr12:59904383-59916767	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv1846651	chr12:59909653-59946206	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:59912400-59921000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:59913400-59914000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr12:59913600-59914000	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr12:59913600-59914000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr12:59913600-59914000	Enhancers	Primary T helper cells PMA-I stimulated	--

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