Variant report

Variant	rs908823
Chromosome Location	chr4:124906861-124906862
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11930406	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1401533	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4833297	0.90[AFR][1000 genomes]
rs4833298	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72917274	1.00[EUR][1000 genomes]
rs9307533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9307534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs983888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9884321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9968463	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9968469	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv830049	chr4:124793932-124955708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv879876	chr4:124847477-124908231	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879877	chr4:124847477-124935698	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv879878	chr4:124850901-124935698	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv879879	chr4:124893772-124971109	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124904400-124908600	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:124905800-124907400	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:124905800-124908200	Enhancers	HSMMtube	muscle
4	chr4:124906200-124907000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:124906200-124907200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:124906200-124910400	Enhancers	HUVEC	blood vessel
7	chr4:124906400-124907600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:124906600-124907600	Enhancers	NHDF-Ad	bronchial
9	chr4:124906600-124908800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:124906600-124908800	Enhancers	NHLF	lung
11	chr4:124906800-124907000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:124906800-124907000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:124906800-124907000	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr4:124906800-124907000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr4:124906800-124907200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr4:124906800-124907400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr4:124906800-124907400	Enhancers	HMEC	breast
18	chr4:124906800-124907600	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr4:124906800-124907600	Enhancers	NH-A	brain
20	chr4:124906800-124907800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:124906800-124907800	Enhancers	Rectal Smooth Muscle	rectum
22	chr4:124906800-124908400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:124906800-124908400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr4:124906800-124908400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:124906800-124908800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr4:124906800-124908800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:124906800-124908800	Enhancers	Adipose Nuclei	Adipose
28	chr4:124906800-124908800	Enhancers	Osteobl	bone
29	chr4:124906800-124909200	Enhancers	HSMM	muscle

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