Variant report

Variant	rs908834
Chromosome Location	chr9:139890918-139890919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:123)
CpG islands
(count:61)
Chromatin interactive
region (count:36)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:123 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:139890306-139892635	MCF10A-Er-Src	breast:	n/a	n/a
2	TBP	chr9:139890482-139891018	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr9:139890893-139891396	HUVEC	blood vessel:	n/a	n/a
4	SPI1	chr9:139890820-139891009	GM12891	blood:	n/a	chr9:139890849-139890862
5	POLR2A	chr9:139890550-139891343	HCT-116	colon:	n/a	n/a
6	SMC3	chr9:139890325-139891866	Hela-S3	cervix:	n/a	chr9:139891303-139891313
7	EP300	chr9:139890740-139892083	ECC-1	luminal epithelium:	n/a	chr9:139891124-139891140 chr9:139891003-139891019 chr9:139891007-139891023
8	POLR2A	chr9:139889908-139892271	MCF-7	breast:	n/a	n/a
9	YY1	chr9:139890837-139891121	GM12878	blood:	n/a	chr9:139891074-139891088
10	SMARCB1	chr9:139890544-139892198	Hela-S3	cervix:	n/a	n/a
11	HDAC2	chr9:139890211-139891999	MCF-7	breast:	n/a	n/a
12	ELF1	chr9:139890790-139891377	A549	lung:	n/a	n/a
13	POLR2A	chr9:139889954-139891991	ECC-1	luminal epithelium:	n/a	n/a
14	ETS1	chr9:139890827-139891124	K562	blood:	n/a	chr9:139890848-139890859 chr9:139890915-139890928 chr9:139890847-139890861 chr9:139890915-139890926
15	ELF1	chr9:139890795-139891128	K562	blood:	n/a	n/a
16	MAX	chr9:139890765-139891953	ECC-1	luminal epithelium:	n/a	chr9:139891059-139891069
17	BHLHE40	chr9:139890701-139891058	K562	blood:	n/a	chr9:139891006-139891022 chr9:139890940-139890956
18	POLR2A	chr9:139886293-139892292	MCF-7	breast:	n/a	n/a
19	POLR2A	chr9:139890195-139891668	PFSK-1	brain:	n/a	n/a
20	USF2	chr9:139890405-139891557	Hela-S3	cervix:	n/a	chr9:139891006-139891022 chr9:139890940-139890956
21	BRCA1	chr9:139890639-139891013	Hela-S3	cervix:	n/a	n/a
22	POLR2A	chr9:139890513-139891453	K562	blood:	n/a	n/a
23	CHD2	chr9:139890264-139891852	Hela-S3	cervix:	n/a	n/a
24	POLR2A	chr9:139890212-139892160	HepG2	liver:	n/a	n/a
25	POLR2A	chr9:139889904-139892638	ECC-1	luminal epithelium:	n/a	n/a
26	ETS1	chr9:139890776-139891244	K562	blood:	n/a	chr9:139890848-139890859 chr9:139890915-139890928 chr9:139890847-139890861 chr9:139890915-139890926
27	YY1	chr9:139890892-139891118	HCT-116	colon:	n/a	chr9:139891074-139891088
28	YY1	chr9:139890845-139891337	ECC-1	luminal epithelium:	n/a	chr9:139891074-139891088
29	IRF1	chr9:139890905-139891718	K562	blood:	n/a	chr9:139891519-139891528 chr9:139891056-139891070
30	PBX3	chr9:139890424-139891881	SK-N-SH	brain:	n/a	chr9:139891071-139891091
31	RCOR1	chr9:139890422-139891176	Hela-S3	cervix:	n/a	n/a
32	TAF1	chr9:139890758-139891780	ECC-1	luminal epithelium:	n/a	n/a
33	MAX	chr9:139890753-139891283	K562	blood:	n/a	chr9:139891059-139891069
34	RFX5	chr9:139890353-139891840	Hela-S3	cervix:	n/a	n/a
35	MAX	chr9:139890719-139891503	A549	lung:	n/a	chr9:139891059-139891069
36	ELF1	chr9:139890822-139891429	GM12878	blood:	n/a	n/a
37	SIN3A	chr9:139890811-139891082	H1-hESC	embryonic stem cell:	n/a	n/a
38	YY1	chr9:139890813-139891098	A549	lung:	n/a	chr9:139891074-139891088
39	ETS1	chr9:139890720-139891265	A549	lung:	n/a	chr9:139890848-139890859 chr9:139890915-139890928 chr9:139890847-139890861 chr9:139890915-139890926
40	MAX	chr9:139889737-139891830	MCF-7	breast:	n/a	chr9:139891059-139891069
41	ELF1	chr9:139890591-139891870	MCF-7	breast:	n/a	n/a
42	HA-E2F1	chr9:139890850-139891937	MCF-7	breast:	n/a	n/a
43	TCF12	chr9:139890518-139891594	A549	lung:	n/a	n/a
44	POLR2A	chr9:139889641-139892503	Hela-S3	cervix:	n/a	n/a
45	JUND	chr9:139890214-139891518	A549	lung:	n/a	chr9:139891374-139891385 chr9:139890285-139890294
46	POLR2A	chr9:139890004-139891665	K562	blood:	n/a	n/a
47	HCFC1	chr9:139890850-139891033	K562	blood:	n/a	n/a
48	GTF2F1	chr9:139890466-139890934	Hela-S3	cervix:	n/a	n/a
49	MAX	chr9:139890400-139891858	Hela-S3	cervix:	n/a	chr9:139891059-139891069
50	TCF12	chr9:139890811-139891487	A549	lung:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:139890918-139890968	SAEC	small airway:	n/a
2	chr9:139890918-139890968	MCF-7	breast:	n/a
3	chr9:139890918-139890968	T-47D	breast:	n/a
4	chr9:139890918-139890968	HCT-116	colon:	n/a
5	chr9:139890918-139890968	NT2-D1	testis:	n/a
6	chr9:139890918-139890968	HRPEpiC	eye:	n/a
7	chr9:139890918-139890968	PrEC	prostate:	n/a
8	chr9:139890918-139890968	U87	brain:	n/a
9	chr9:139890918-139890968	HIPEpiC	eye:	n/a
10	chr9:139890918-139890968	ovcar-3	ovarian:	n/a
11	chr9:139890918-139890968	HEK293	kidney:	embryo
12	chr9:139890918-139890968	GM12878	blood:	n/a
13	chr9:139890918-139890968	PFSK-1	brain:	n/a
14	chr9:139890918-139890968	PANC-1	pancreas:	n/a
15	chr9:139890918-139890968	HMEC	breast:	n/a
16	chr9:139890918-139890968	AG04449	skin:	fetal
17	chr9:139890918-139890968	Hepatocyte	liver:	n/a
18	chr9:139890918-139890968	NH-A	brain:	n/a
19	chr9:139890918-139890968	HNPCEpiC	eye:	n/a
20	chr9:139890918-139890968	Hela-S3	cervix:	n/a
21	chr9:139890918-139890968	GM19239	blood:	n/a
22	chr9:139890918-139890968	AoSMC	blood vessel:	n/a
23	chr9:139890918-139890968	GM12891	blood:	n/a
24	chr9:139890918-139890968	BE2_C	brain:	n/a
25	chr9:139890918-139890968	AG09309	skin:	n/a
26	chr9:139890918-139890968	Caco-2	colon:	n/a
27	chr9:139890918-139890968	NB4	blood:	n/a
28	chr9:139890918-139890968	NHDF-neo	bronchial:	n/a
29	chr9:139890918-139890968	HRE	kidney:	n/a
30	chr9:139890918-139890968	HCF	heart:	n/a
31	chr9:139890918-139890968	Jurkat	blood:	n/a
32	chr9:139890918-139890968	AG04450	lung:	fetal
33	chr9:139890918-139890968	HAEpiC	amniotic membrane:	n/a
34	chr9:139890918-139890968	BJ	skin:	n/a
35	chr9:139890918-139890968	HCM	heart:	n/a
36	chr9:139890918-139890968	HUVEC	blood vessel:	n/a
37	chr9:139890918-139890968	SK-N-SH	brain:	n/a
38	chr9:139890918-139890968	HepG2	liver:	n/a
39	chr9:139890918-139890968	HEEpiC	esophagus:	n/a
40	chr9:139890918-139890968	CMK	blood:	n/a
41	chr9:139890918-139890968	SKMC	muscle:	n/a
42	chr9:139890918-139890968	AG10803	skin:	n/a
43	chr9:139890918-139890968	GM12892	blood:	n/a
44	chr9:139890918-139890968	A549	lung:	n/a
45	chr9:139890918-139890968	MCF10A-Er-Src	breast:	n/a
46	chr9:139890918-139890968	HRCEpiC	kidney:	n/a
47	chr9:139890918-139890968	HCPEpiC	choroid plexus:	n/a
48	chr9:139890918-139890968	GM06990	blood:	n/a
49	chr9:139890918-139890968	SK-N-SH_RA	brain:	n/a
50	chr9:139890918-139890968	ECC-1	luminal epithelium:	n/a

(count:36 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:139884297..139893800-chr9:139910309..139932457,68	MCF-7	breast:
2	chr17:57917328..57919796-chr9:139890144..139891727,2	MCF-7	breast:
3	chr9:139888906..139893229-chr9:139898549..139903360,5	MCF-7	breast:
4	chr9:139842605..139846336-chr9:139889751..139893844,5	K562	blood:
5	chr9:139775051..139777712-chr9:139889638..139891649,3	MCF-7	breast:
6	chr9:139889525..139892159-chr9:139938466..139941669,5	MCF-7	breast:
7	chr9:139887009..139891306-chr9:139978318..139981819,5	MCF-7	breast:
8	chr9:139885641..139893253-chr9:139914079..139925631,41	MCF-7	breast:
9	chr14:45552187..45554745-chr9:139890498..139892780,2	MCF-7	breast:
10	chr9:139605586..139608472-chr9:139888764..139891536,2	K562	blood:
11	chr9:139620737..139624257-chr9:139888286..139891164,3	K562	blood:
12	chr9:139835507..139852162-chr9:139884980..139895056,54	MCF-7	breast:
13	chr9:139701796..139704136-chr9:139890013..139892954,3	MCF-7	breast:
14	chr9:139888956..139891234-chr9:140119480..140122197,2	MCF-7	breast:
15	chr11:82868155..82870467-chr9:139889763..139892696,2	MCF-7	breast:
16	chr9:139886700..139892258-chr9:139898628..139905253,11	MCF-7	breast:
17	chr9:139737023..139739499-chr9:139889680..139891959,2	MCF-7	breast:
18	chr9:139836188..139848313-chr9:139883522..139894647,40	MCF-7	breast:
19	chr9:139889696..139892574-chr9:139913631..139916495,2	K562	blood:
20	chr9:139884830..139892589-chr9:139945996..139953148,8	MCF-7	breast:
21	chr9:139778188..139780613-chr9:139888294..139891195,2	MCF-7	breast:
22	chr19:41769462..41771518-chr9:139890234..139892822,2	MCF-7	breast:
23	chr9:139889162..139891351-chr9:139979563..139981376,2	MCF-7	breast:
24	chr13:20531855..20533845-chr9:139890626..139892610,2	MCF-7	breast:
25	chr9:139741392..139743891-chr9:139890896..139894432,4	K562	blood:
26	chr9:139743062..139745588-chr9:139889291..139892478,4	MCF-7	breast:
27	chr9:139739695..139750977-chr9:139884187..139892196,24	MCF-7	breast:
28	chr9:139836453..139844148-chr9:139884945..139890988,15	K562	blood:
29	chr9:139837304..139841351-chr9:139889068..139893319,4	K562	blood:
30	chr9:139890269..139892720-chr9:139943488..139945642,2	MCF-7	breast:
31	chr9:139890178..139892429-chr9:139970616..139974242,3	MCF-7	breast:
32	chr9:139862153..139865511-chr9:139888791..139891229,4	MCF-7	breast:
33	chr9:139795556..139798405-chr9:139890172..139893015,2	MCF-7	breast:
34	chr9:139889634..139894449-chr9:139905288..139908460,7	MCF-7	breast:
35	chr9:139684580..139687679-chr9:139885169..139891093,6	MCF-7	breast:
36	chr9:139618479..139621443-chr9:139890768..139893620,2	K562	blood:

No data

Variant related genes	Relation type
CLIC3	TF binding region
CLIC3	CpG island
ENSG00000127191	Chromatin interaction
ENSG00000228544	Chromatin interaction
ENSG00000244187	Chromatin interaction
ENSG00000177943	Chromatin interaction
ENSG00000180539	Chromatin interaction
ENSG00000054179	Chromatin interaction
ENSG00000198454	Chromatin interaction
ENSG00000165494	Chromatin interaction
ENSG00000197355	Chromatin interaction
ENSG00000249163	Chromatin interaction
ENSG00000229257	Chromatin interaction
ENSG00000272896	Chromatin interaction
ENSG00000268996	Chromatin interaction
ENSG00000185246	Chromatin interaction
ENSG00000107331	Chromatin interaction
ENSG00000196642	Chromatin interaction
ENSG00000184925	Chromatin interaction
ENSG00000165716	Chromatin interaction
ENSG00000197191	Chromatin interaction
ENSG00000233198	Chromatin interaction
ENSG00000176919	Chromatin interaction
ENSG00000236394	Chromatin interaction
ENSG00000235117	Chromatin interaction
ENSG00000233016	Chromatin interaction
ENSG00000232434	Chromatin interaction
ENSG00000107281	Chromatin interaction
ENSG00000177239	Chromatin interaction
ENSG00000054148	Chromatin interaction
ENSG00000159069	Chromatin interaction
ENSG00000180549	Chromatin interaction
ENSG00000121741	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000105323	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs3188722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73563229	1.00[AMR][1000 genomes]
rs73563234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73563250	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73563253	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs908835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:66 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540342	chr9:139218422-139973312	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	317 gene(s)	inside rSNPs	diseases
2	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
3	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
4	nsv1039149	chr9:139376829-139991102	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	303 gene(s)	inside rSNPs	diseases
5	esv1803979	chr9:139395473-139979276	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
6	esv1831778	chr9:139395473-139979276	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
7	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
8	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
9	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
10	nsv894451	chr9:139598108-139995065	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
11	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
12	nsv894454	chr9:139607966-139904037	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	172 gene(s)	inside rSNPs	diseases
13	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
14	nsv818738	chr9:139634495-139904037	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	126 gene(s)	inside rSNPs	diseases
15	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
16	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
17	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
18	nsv894469	chr9:139693992-140118448	Bivalent Enhancer Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
19	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
20	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
21	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
22	nsv894483	chr9:139709976-139963091	Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	119 gene(s)	inside rSNPs	diseases
23	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
24	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
25	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
26	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
27	esv1803771	chr9:139776400-140274255	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	321 gene(s)	inside rSNPs	diseases
28	nsv894498	chr9:139810595-140339091	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	324 gene(s)	inside rSNPs	diseases
29	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
30	esv1823828	chr9:139820363-140023694	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	121 gene(s)	inside rSNPs	diseases
31	esv1822764	chr9:139822266-140202692	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
32	nsv894500	chr9:139823670-139930945	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	85 gene(s)	inside rSNPs	diseases
33	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
34	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
35	nsv894503	chr9:139830940-139987350	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
36	esv1834381	chr9:139834195-140031290	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	125 gene(s)	inside rSNPs	diseases
37	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
38	nsv894506	chr9:139841512-140143801	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	278 gene(s)	inside rSNPs	diseases
39	nsv894507	chr9:139860264-139995065	Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
40	nsv894512	chr9:139860631-139894734	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases
41	nsv894513	chr9:139860631-139904037	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases
42	nsv894514	chr9:139860631-139943112	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	79 gene(s)	inside rSNPs	diseases
43	nsv894515	chr9:139860631-139963091	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
44	nsv894517	chr9:139860631-139977351	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases
45	nsv894516	chr9:139860631-139979276	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
46	nsv894518	chr9:139860631-139995065	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
47	nsv466690	chr9:139860631-140042320	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	117 gene(s)	inside rSNPs	diseases
48	nsv615989	chr9:139860631-140042320	Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	117 gene(s)	inside rSNPs	diseases
49	nsv615990	chr9:139860631-140068342	Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	118 gene(s)	inside rSNPs	diseases
50	nsv894519	chr9:139860631-140123584	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139887200-139891000	Enhancers	Fetal Heart	heart
2	chr9:139887600-139891200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:139887600-139891600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:139887600-139892200	Enhancers	Fetal Lung	lung
5	chr9:139887800-139891000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:139887800-139891000	Bivalent Enhancer	Fetal Intestine Large	intestine
7	chr9:139887800-139891200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:139887800-139891400	Weak transcription	Brain Substantia Nigra	brain
9	chr9:139887800-139892800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr9:139888000-139891000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr9:139888000-139892800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
12	chr9:139888400-139891000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
13	chr9:139888800-139894600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:139889000-139892000	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr9:139889200-139891600	Bivalent Enhancer	Brain Germinal Matrix	brain
16	chr9:139889200-139892000	Enhancers	NHEK	skin
17	chr9:139889400-139891000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:139889400-139891800	Enhancers	Small Intestine	intestine
19	chr9:139889400-139892200	Enhancers	Pancreas	Pancrea
20	chr9:139889600-139891000	Enhancers	NHDF-Ad	bronchial
21	chr9:139889600-139891200	Bivalent Enhancer	Fetal Brain Male	brain
22	chr9:139889600-139891400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr9:139889600-139891400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
24	chr9:139889600-139891600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:139889600-139891600	Flanking Active TSS	Placenta	Placenta
26	chr9:139889600-139891800	Bivalent Enhancer	Adipose Nuclei	Adipose
27	chr9:139889600-139892400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
28	chr9:139889600-139893200	Enhancers	HUVEC	blood vessel
29	chr9:139889800-139891000	Bivalent Enhancer	Fetal Muscle Leg	muscle
30	chr9:139889800-139891200	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
31	chr9:139889800-139891200	Enhancers	Dnd41	blood
32	chr9:139889800-139891400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr9:139889800-139891400	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr9:139889800-139891400	Active TSS	Placenta Amnion	Placenta Amnion
35	chr9:139889800-139891600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:139889800-139891600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
37	chr9:139889800-139891800	Enhancers	Brain Anterior Caudate	brain
38	chr9:139889800-139892000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr9:139889800-139892200	Enhancers	Brain Hippocampus Middle	brain
40	chr9:139889800-139893200	Flanking Active TSS	Hela-S3	cervix
41	chr9:139889800-139894600	Enhancers	Primary B cells from cord blood	blood
42	chr9:139890000-139891200	Flanking Active TSS	HSMM	muscle
43	chr9:139890000-139891400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr9:139890000-139891400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr9:139890000-139891400	Enhancers	NHLF	lung
46	chr9:139890000-139891600	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr9:139890000-139892800	Enhancers	Right Ventricle	heart
48	chr9:139890200-139891000	Enhancers	K562	blood
49	chr9:139890200-139891200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr9:139890200-139891200	Enhancers	GM12878-XiMat	blood

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