Variant report

Variant	rs909926
Chromosome Location	chr1:169056077-169056078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169055830..169060702-chr1:169073415..169077056,5	MCF-7	breast:
2	chr1:169053133..169065213-chr1:169070028..169077898,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237707	Chromatin interaction
ENSG00000143153	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1200105	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1200108	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv831858	chr1:169022383-169179068	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs909926	TIPRL	cis	cerebellum	SCAN

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169054800-169056200	Enhancers	Fetal Brain Male	brain
2	chr1:169054800-169056600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:169054800-169057200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:169054800-169057400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:169054800-169058600	Enhancers	Fetal Intestine Large	intestine
6	chr1:169055000-169056200	Enhancers	Fetal Muscle Trunk	muscle
7	chr1:169055000-169057200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:169055000-169057200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:169055000-169057200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr1:169055000-169057200	Enhancers	HepG2	liver
11	chr1:169055000-169058000	Enhancers	Fetal Intestine Small	intestine
12	chr1:169055200-169056200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr1:169055200-169056400	Enhancers	Small Intestine	intestine
14	chr1:169055200-169056600	Enhancers	Placenta Amnion	Placenta Amnion
15	chr1:169055200-169056800	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr1:169055200-169057400	Enhancers	Primary hematopoietic stem cells	blood
17	chr1:169055200-169057400	Enhancers	Left Ventricle	heart
18	chr1:169055200-169058600	Enhancers	Brain Angular Gyrus	brain
19	chr1:169055200-169062200	Enhancers	Brain Anterior Caudate	brain
20	chr1:169055400-169060400	Enhancers	Brain Substantia Nigra	brain
21	chr1:169055800-169056200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
22	chr1:169055800-169056400	Enhancers	Primary T cells fromperipheralblood	blood
23	chr1:169055800-169056400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr1:169055800-169056400	Enhancers	Right Atrium	heart
25	chr1:169055800-169056400	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr1:169055800-169056600	Flanking Active TSS	Brain Hippocampus Middle	brain
27	chr1:169055800-169056600	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr1:169055800-169056800	Flanking Active TSS	Fetal Heart	heart
29	chr1:169055800-169056800	Enhancers	Ovary	ovary
30	chr1:169055800-169057000	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr1:169055800-169057000	Enhancers	Stomach Smooth Muscle	stomach
32	chr1:169055800-169057200	Enhancers	Primary T cells from cord blood	blood
33	chr1:169055800-169057400	Enhancers	Fetal Lung	lung
34	chr1:169055800-169057600	Enhancers	Duodenum Mucosa	Duodenum
35	chr1:169055800-169057600	Enhancers	Pancreas	Pancrea
36	chr1:169055800-169058000	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr1:169055800-169058000	Enhancers	Right Ventricle	heart
38	chr1:169055800-169058200	Enhancers	Colon Smooth Muscle	Colon
39	chr1:169056000-169056200	Enhancers	Brain Cingulate Gyrus	brain
40	chr1:169056000-169056400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr1:169056000-169056400	Flanking Active TSS	Fetal Brain Female	brain
42	chr1:169056000-169056600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr1:169056000-169056600	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr1:169056000-169056600	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr1:169056000-169056800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr1:169056000-169056800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr1:169056000-169056800	Enhancers	Fetal Muscle Leg	muscle
48	chr1:169056000-169057200	Enhancers	Stomach Mucosa	stomach
49	chr1:169056000-169058200	Enhancers	Rectal Smooth Muscle	rectum

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