Variant report

Variant	rs911121
Chromosome Location	chr20:23624589-23624590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23618907..23621320-chr20:23623456..23625394,2	K562	blood:
2	chr20:23615462..23617688-chr20:23624542..23627030,2	MCF-7	breast:
3	chr20:23624045..23625707-chr20:23633322..23636030,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101439	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2243863	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs238645	1.00[MEX][hapmap]
rs238646	1.00[MEX][hapmap]
rs238650	1.00[MEX][hapmap]
rs2405391	1.00[MEX][hapmap]
rs2424579	1.00[MEX][hapmap]
rs2983618	1.00[MEX][hapmap]
rs3004138	1.00[MEX][hapmap]
rs911123	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23618600-23624800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:23618600-23626000	Weak transcription	Gastric	stomach
3	chr20:23618800-23625200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr20:23618800-23626400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr20:23618800-23628600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr20:23620000-23625000	Enhancers	Fetal Thymus	thymus
7	chr20:23621200-23625200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr20:23621400-23624800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr20:23621400-23625000	Enhancers	Adipose Nuclei	Adipose
10	chr20:23621800-23624600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr20:23622000-23625600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr20:23622200-23624800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr20:23622200-23636600	Weak transcription	Pancreas	Pancrea
14	chr20:23622800-23625400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr20:23622800-23625400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr20:23622800-23640000	Weak transcription	Stomach Mucosa	stomach
17	chr20:23623000-23624800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr20:23623000-23625200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr20:23623000-23634200	Weak transcription	Right Atrium	heart
20	chr20:23623200-23626800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr20:23623200-23636200	Weak transcription	Lung	lung
22	chr20:23623400-23625000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr20:23623400-23625400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr20:23623400-23625600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr20:23623600-23626800	Weak transcription	NHEK	skin
26	chr20:23623600-23627200	Weak transcription	HMEC	breast
27	chr20:23623800-23624800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr20:23623800-23625000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr20:23623800-23626600	Weak transcription	HUVEC	blood vessel
30	chr20:23623800-23627000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr20:23624000-23624600	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr20:23624000-23624800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr20:23624200-23624800	Enhancers	Primary B cells from cord blood	blood
34	chr20:23624200-23633000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr20:23624400-23624600	Enhancers	Thymus	Thymus
36	chr20:23624400-23624600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr20:23624400-23625000	Flanking Active TSS	GM12878-XiMat	blood
38	chr20:23624400-23626600	Weak transcription	Fetal Muscle Leg	muscle
39	chr20:23624400-23627400	Weak transcription	HepG2	liver

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