Variant report

Variant	rs911561
Chromosome Location	chr11:35399110-35399111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35394822..35396957-chr11:35397807..35400787,2	MCF-7	breast:
2	chr11:35397672..35399931-chr11:35409140..35411675,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000215380	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11033104	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11033105	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1923300	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1923301	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3847623	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs911562	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv430372	chr11:35376124-35430324	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs911561	ANG	trans	parietal	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35389000-35406400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:35389200-35408600	Weak transcription	Aorta	Aorta
3	chr11:35390400-35401800	Weak transcription	Right Atrium	heart
4	chr11:35390600-35401800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:35392400-35402600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:35395000-35401800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:35395200-35399200	Weak transcription	Brain Anterior Caudate	brain
8	chr11:35395400-35399600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:35395600-35401000	Weak transcription	Psoas Muscle	Psoas
10	chr11:35395600-35401000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:35395600-35401000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr11:35396000-35401800	Weak transcription	Left Ventricle	heart
13	chr11:35397200-35402600	Enhancers	NHDF-Ad	bronchial
14	chr11:35397400-35399400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:35397600-35399200	Enhancers	Adipose Nuclei	Adipose
16	chr11:35397600-35401400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:35398400-35399200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:35398400-35399400	Enhancers	Brain Angular Gyrus	brain
19	chr11:35398400-35400000	Enhancers	NHLF	lung
20	chr11:35398400-35400400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:35398600-35399400	Enhancers	Fetal Brain Female	brain
22	chr11:35398800-35400000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr11:35398800-35401400	Enhancers	Brain Hippocampus Middle	brain
24	chr11:35398800-35401600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr11:35398800-35401600	Weak transcription	Osteobl	bone
26	chr11:35398800-35401800	Weak transcription	NH-A	brain
27	chr11:35399000-35399200	Enhancers	Brain Substantia Nigra	brain
28	chr11:35399000-35401000	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:35399000-35401000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr11:35399000-35408800	Weak transcription	Pancreas	Pancrea

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