Variant report

Variant	rs911763
Chromosome Location	chr9:8133859-8133860
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10120516	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10125582	0.90[EUR][1000 genomes]
rs12346254	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1416595	0.90[EUR][1000 genomes]
rs1578117	0.99[ASN][1000 genomes]
rs1998338	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2224580	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6477263	1.00[ASN][1000 genomes]
rs7018535	1.00[ASN][1000 genomes]
rs7032452	0.99[ASN][1000 genomes]
rs733069	0.82[EUR][1000 genomes]
rs911766	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024456	chr9:7887727-8157591	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539979	chr9:7887727-8157591	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1027699	chr9:8094833-8144973	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv613283	chr9:8102278-8141003	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1018671	chr9:8102490-8163549	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv523627	chr9:8106282-8161572	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv1030904	chr9:8108480-8163549	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv1015783	chr9:8117601-8148244	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs911763	AK3	cis	cerebellum	SCAN
rs911763	KDM4C	cis	parietal	SCAN
rs911763	C9orf123	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8133000-8134200	Enhancers	Brain Cingulate Gyrus	brain
2	chr9:8133000-8134800	Enhancers	Brain Substantia Nigra	brain
3	chr9:8133000-8135000	Enhancers	Brain Hippocampus Middle	brain
4	chr9:8133000-8135000	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr9:8133400-8134200	Weak transcription	Brain Angular Gyrus	brain
6	chr9:8133600-8134800	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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