Variant report

Variant	rs913297
Chromosome Location	chr20:22709353-22709354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56170415	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73900561	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73900563	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73900565	1.00[EUR][1000 genomes]
rs8115122	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061382	chr20:22706041-22763200	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22707600-22710000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr20:22708000-22710400	Enhancers	Spleen	Spleen
3	chr20:22708200-22710000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr20:22708400-22710000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr20:22708400-22710200	Enhancers	HSMM	muscle
6	chr20:22708400-22710600	Enhancers	Stomach Mucosa	stomach
7	chr20:22708600-22709400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr20:22708800-22710200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr20:22708800-22710200	Enhancers	A549	lung
10	chr20:22709000-22709400	Weak transcription	Hela-S3	cervix
11	chr20:22709000-22709800	Enhancers	Right Ventricle	heart
12	chr20:22709000-22710000	Enhancers	HMEC	breast
13	chr20:22709000-22710000	Enhancers	NHEK	skin
14	chr20:22709000-22710400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr20:22709200-22710200	Enhancers	NHDF-Ad	bronchial
16	chr20:22709200-22711000	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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