Variant report

Variant	rs913473
Chromosome Location	chr6:39367830-39367831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1328386	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1328389	0.88[YRI][hapmap]
rs1410484	1.00[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1571362	0.95[EUR][1000 genomes]
rs1887711	1.00[CEU][hapmap]
rs2395726	0.93[EUR][1000 genomes]
rs3734621	1.00[GIH][hapmap]
rs4714252	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6900461	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs9369115	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9462541	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs9471075	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv533806	chr6:39270073-39397337	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39356000-39369600	Weak transcription	Brain Angular Gyrus	brain
2	chr6:39362400-39369600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:39362600-39369600	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:39364800-39368600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:39365600-39368600	Weak transcription	Brain Substantia Nigra	brain
6	chr6:39365600-39369400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:39367600-39368000	Enhancers	Placenta	Placenta
8	chr6:39367600-39371600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:39367800-39368400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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